LOCUS BC009936 2631 bp mRNA linear HUM 26-APR-2004
DEFINITION Homo sapiens phosphofurin acidic cluster sorting protein 1, mRNA
(cDNA clone IMAGE:4134919), partial cds.
ACCESSION BC009936
VERSION BC009936.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2631)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2631)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: i Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922284.
FEATURES Location/Qualifiers
source 1..2631
/db_xref="H-InvDB:HIT000258936"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4134919"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2631
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/db_xref="GeneID:55690"
/db_xref="MIM:607492"
CDS <1..1101
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/codon_start=1
/product="PACS1 protein"
/protein_id="AAH09936.1"
/db_xref="GeneID:55690"
/db_xref="MIM:607492"
/translation="GTRAVLSALLTRIQRYCNCNSSMPRPVKVAAVGGQSYLSSILRF
FVKSLANKTSDWLGYMRFLIIPLGSHPVAKYLGSVDSKYSSSFLDSGWRDLFSRSEPP
VSEQLDVAGRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLV
EDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSP
YGDVIGLQVDYWLGHPGERRREGDKRDASSKNTLKSVFRSVQVSRLPHSGEAQLSGTM
AMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGV
EWSDIKFFQLAAQWPTHVKHFPVGLFSGSKAT"
BASE COUNT 526 a 904 c 632 g 569 t
ORIGIN
1 ggcacgaggg ccgtgctgtc cgccctgctc acccggatcc agcgctactg caactgcaac
61 tcttccatgc cgaggccagt gaaggtggct gctgtgggag gccagagcta cctgagctcc
121 atcctcaggt tctttgtcaa gtccctggcc aacaagacct ccgactggct tggctacatg
181 cgcttcctca tcatccccct cggttctcac cctgtggcca aatacttggg gtcagtcgac
241 agtaaataca gtagttcctt cctggattct ggttggagag atctgttcag tcgctcggag
301 ccaccagtgt cagagcaact ggacgtggca gggcgggtga tgcagtacgt caacggggca
361 gccacgacac accagcttcc cgtggccgaa gccatgctga cttgccggca taagttccct
421 gatgaagact cctatcagaa gtttattccc ttcattggcg tggtgaaggt gggtctggtt
481 gaagactctc cctccacagc aggcgatggg gacgattctc ctgtggtcag ccttactgtg
541 ccctccacat caccaccctc cagctcgggc ctgagccgag acgccacggc cacccctccc
601 tcctccccat ctatgagcag cgccctggcc atcgtgggga gccctaatag cccatatggg
661 gacgtgattg gcctccaggt ggactactgg ctgggccacc ccggggagcg gaggagggaa
721 ggcgacaaga gggacgccag ctcgaagaac accctcaaga gtgtcttccg ctcagtgcag
781 gtgtcccgcc tgccccatag tggggaggcc cagctttctg gcaccatggc catgactgtg
841 gtcaccaaag aaaagaacaa gaaagttccc accatcttcc tgagcaagaa accccgagaa
901 aaggaggtgg attctaagag ccaggtcatt gaaggcatca gccgcctcat ctgctcagcc
961 aagcagcagc agactatgct gagagtgtcc atcgatgggg tcgagtggag tgacatcaag
1021 ttcttccagc tggcagccca gtggcccacc catgtcaagc actttccagt gggactcttc
1081 agtggcagca aggccacctg aggccctgtc tcccagccac tttccctcct ggcactgcca
1141 ccagcctcac cgcctgcggg cagggggagg ccagcaggcc cgggcccagc accccttccc
1201 tggcaccagg gtctgcctct cactcgccca ggtcccgaag gacactgcca cagggacgcc
1261 ttccctcccc tcccctccag cccacccctg cacagcccct cctccttccc gcttttcccc
1321 ttctccctcc tgctccaggc ccaaggcgtg ttggttttgc cttctggtgc ccatagtccc
1381 ctggactgag tcccccaggc cttccttcac ccgacttcca aactcttcct tgtggtatca
1441 gtttccttct cggaaatgag aaagctggaa tcctggtccc cagcaggaga gcctagtcct
1501 cccccagccc ctccagccac cagggtgtcc tctaggatgc agctgccaga tccactcact
1561 ctgctgcctc cagcaggacc caaggccact ttcaactctt atggggttct ccacctgccc
1621 cagagcttct caagggaggg taagggggca ccctgagccc acaggacccc tacttcacag
1681 ctcacagggg caggaggcag ctcccctgcc tccaggaccc tgttgctatg gtgacacagc
1741 gtttctagga cagaggggcc tcccagtctc cccccaccac ccgtgcacga cttcctcacc
1801 acccccaggt tccctgcaga tgtcgtgtgt gtcctgagtg tttctttggt tctttgcacg
1861 ccaagtctct tggttgtacc atgtgacaca ccctgtgcac tggtcgctgt cttcgtggct
1921 tccacccttg ttaatgatgc tcctgcctct gcctcccagc ccctcaccca gcacagctct
1981 gcctggactt ggagagatgg gaggcagacc cccaccacca tacatgctgt ctgtggcccc
2041 tcagacattc tgtttcatct cccattcatc tccctcctcc caccgtgtca gtttttctgc
2101 ctttccctgc tctgttcttc cccctcctta ggccccagcc tgggcccaga cccatcctcc
2161 cagccaggtt tccctccagc aggctccttc cctccctgtc acctccctct caccaacccg
2221 gggtctgagc ccctcattcc tgaccgtccg tgttctcagg agtggttgag gacacagggc
2281 cccagcccag ccctctgcac cccccagccc ggccatctgc gccccacagc ccctttggag
2341 cttttctctt gtcctctcac tccttcccag aagtttttgc acagaacttc attttgaaag
2401 tgtttttctc attctccata cctcccccaa gctctcctcc agcccttccc agggctcagc
2461 cctgctgtcc tgagcgtctc ctgggccaga gagaggagat gggggtggga gggactgagt
2521 tgatgttggg tttttcattc aataaattgg tgatttctta ccgaaaaaaa aaaaaaaaaa
2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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