LOCUS BC009897 1873 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 15, mRNA (cDNA clone MGC:2052
IMAGE:3510379), complete cds.
ACCESSION BC009897
VERSION BC009897.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1873)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1873)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC009897.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46370087.
FEATURES Location/Qualifiers
source 1..1873
/db_xref="H-InvDB:HIT000034652"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2052 IMAGE:3510379"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1873
/gene="SNX15"
/gene_synonym="HSAF001435"
/db_xref="GeneID:29907"
/db_xref="HGNC:HGNC:14978"
/db_xref="MIM:605964"
CDS 49..1077
/gene="SNX15"
/gene_synonym="HSAF001435"
/codon_start=1
/product="sorting nexin 15"
/protein_id="AAH09897.1"
/db_xref="GeneID:29907"
/db_xref="HGNC:HGNC:14978"
/db_xref="MIM:605964"
/translation="MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVK
EVVVWKRYSDFRKLHGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAED
LLRFTVHIPALNNSPQLKEFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLL
PAERRGLEELEVPVDPPPSSPAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPF
SKEEGAAPSPTHVAELATMEVESARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELI
TQALRDEKAGAYAAALQGYRDGVHVLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILR
LHLSQLPP"
BASE COUNT 425 a 566 c 495 g 387 t
ORIGIN
1 cggcgaggag gtggaggccg gcgctccgct ccgctccagc tcggtttcat gtcccgccag
61 gcgaaggatg acttcctgcg gcactacaca gtgtcggacc ccaggactca ccccaagggc
121 tacaccgagt acaaagtaac cgcgcagttc atctcaaaga aggacccaga ggatgtcaaa
181 gaggtggtgg tctggaagcg gtacagcgac ttccgcaagc tgcatggaga cctggcctac
241 acccaccgca acctcttccg ccgcctcgag gagttccccg ctttcccccg ggcccaggtg
301 tttggccggt ttgaagcctc agtgatcgag gagcggcgaa agggggcaga ggacctgctt
361 cgcttcactg tgcacatacc tgcgctcaac aacagccccc agctcaagga gttcttccgg
421 ggtggggagg tgacccgacc cttggaggtg tccagggacc tacacatcct gccaccccct
481 ctgatcccca ccccgccccc tgatgacccc cggctatccc aactgctccc tgcagaaagg
541 aggggcctcg aggaattgga ggtgccagtg gaccccccac catccagccc tgcccaggag
601 gccctggatc tcctctttaa ctgtgagagc accgaggagg catctggttc ccctgcccga
661 ggccccctca ccgaggctga gcttgccctc ttcgacccct tctccaagga agaaggcgca
721 gcccccagcc ccacccatgt ggctgagctg gcaacgatgg aggtggagtc tgcaaggctg
781 gaccaggaac cctgggagcc aggagggcag gaggaggaag aggatgggga aggagggccc
841 acccctgcct acctaagcca ggccacagag ctcatcaccc aggccctgcg ggatgagaag
901 gcaggcgctt acgctgctgc actccagggc tatcgagacg gcgtgcacgt cttgcttcag
961 ggagtcccca gtgacccgtt gcctgcccgc caggaaggtg tgaagaagaa ggcagctgag
1021 tacctgaagc gggcagagga gatcctgcgc ctgcacctgt ctcaactccc accctaacag
1081 ggagtgggcc attccctggg actctcactc ctgcactgcc agccccttct cctctcccca
1141 gggcctggcc ctacctcctg gtcttgtaat tacaggagcc atttctgtag gtaactggac
1201 caagaatgag aaaaataatg aattcttagc tccctgatta cacctgccac cttggaatcc
1261 aggactcaca cttctgaccc tgcctgtctt tttggggttt ttttgagttg gagtctcgct
1321 gtgtcgccca gactggagtg cagtggtggg atcacggctc actgcaacct ccacctccca
1381 ggttcaagca gttctcctgt ctcagcctcc ccagtagctg agattgcagg cacatgccac
1441 cacgcccagc taatattttg tattttcagt agggacgggg ttacaccatg ttggccaggc
1501 tggtctcgaa ctcctgacct caagtgatcc acccgcctca gtctcccaaa gtgctgagat
1561 tacaggcatg agtcactacg cccggcccat gtctgtctgt cttgatgtgt gagcagcagc
1621 tgtggtcatt aaaccattag tttacccctc tagaactggg gtctgcaaac tcccacctgc
1681 agccaaatct ggcccacctc ctttttaatg taagggctgt gagagtggtt tttacttttt
1741 taatgattaa aaaaatcaaa ataatattct gtgacaatga caggtgaaat ttatatgtga
1801 caagtgaaaa ttatatgaaa tttaagagtc cataaataaa atttgttgga acacaaaaaa
1861 aaaaaaaaaa aaa
//