LOCUS BC009716 743 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-C motif) ligand 2, mRNA (cDNA clone
MGC:9434 IMAGE:3901489), complete cds.
ACCESSION BC009716
VERSION BC009716.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 743)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 743)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: o Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56119169.
FEATURES Location/Qualifiers
source 1..743
/db_xref="H-InvDB:HIT000034528"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9434 IMAGE:3901489"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..743
/gene="CCL2"
/gene_synonym="GDCF-2"
/gene_synonym="GDCF-2 HC11"
/gene_synonym="HC11"
/gene_synonym="HSMCR30"
/gene_synonym="MCAF"
/gene_synonym="MCP-1"
/gene_synonym="MCP1"
/gene_synonym="MGC9434"
/gene_synonym="SMC-CF"
/db_xref="GeneID:6347"
/db_xref="HGNC:HGNC:10618"
/db_xref="MIM:158105"
CDS 57..356
/gene="CCL2"
/gene_synonym="GDCF-2"
/gene_synonym="GDCF-2 HC11"
/gene_synonym="HC11"
/gene_synonym="HSMCR30"
/gene_synonym="MCAF"
/gene_synonym="MCP-1"
/gene_synonym="MCP1"
/gene_synonym="MGC9434"
/gene_synonym="SMC-CF"
/codon_start=1
/product="chemokine (C-C motif) ligand 2"
/protein_id="AAH09716.1"
/db_xref="GeneID:6347"
/db_xref="HGNC:HGNC:10618"
/db_xref="MIM:158105"
/translation="MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKIS
VQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT"
BASE COUNT 225 a 171 c 127 g 220 t
ORIGIN
1 agactaaccc agaaacatcc aattctcaaa ctgaagctcg cactctcgcc tccagcatga
61 aagtctctgc cgcccttctg tgcctgctgc tcatagcagc caccttcatt ccccaagggc
121 tcgctcagcc agatgcaatc aatgccccag tcacctgctg ttataacttc accaatagga
181 agatctcagt gcagaggctc gcgagctata gaagaatcac cagcagcaag tgtcccaaag
241 aagctgtgat cttcaagacc attgtggcca aggagatctg tgctgacccc aagcagaagt
301 gggttcagga ttccatggac cacctggaca agcaaaccca aactccgaag acttgaacac
361 tcactccaca acccaagaat ctgcagctaa cttattttcc cctagctttc cccagacacc
421 ctgttttatt ttattataat gaattttgtt tgttgatgtg aaacattatg ccttaagtaa
481 tgttaattct tatttaagtt attgatgttt taagtttatc tttcatggta ctagtgtttt
541 ttagatacag agacttgggg aaattgcttt tcctcttgaa ccacagttct acccctggga
601 tgttttgagg gtctttgcaa gaatcattaa tacaaagaat tttttttaac attccaatgc
661 attgctaaaa tattattgtg gaaatgaata ttttgtaact attacaccaa ataaatatat
721 ttttgtacaa aaaaaaaaaa aaa
//