LOCUS BC009675 1953 bp mRNA linear HUM 01-OCT-2003
DEFINITION Homo sapiens BCL6 co-repressor, mRNA (cDNA clone IMAGE:3905618),
partial cds.
ACCESSION BC009675
VERSION BC009675.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1953)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1953)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 1, 2003 this sequence version replaced BC009675.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21071036.
FEATURES Location/Qualifiers
source 1..1953
/db_xref="H-InvDB:HIT000034495"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3905618"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1953
/gene="BCOR"
/gene_synonym="FLJ20285"
/gene_synonym="KIAA1575"
/db_xref="GeneID:54880"
CDS <1..1086
/gene="BCOR"
/gene_synonym="FLJ20285"
/gene_synonym="KIAA1575"
/codon_start=1
/product="BCOR protein"
/protein_id="AAH09675.2"
/db_xref="GeneID:54880"
/translation="RRFRKRPEPSSDYDLSPAKQEPKPFDRLQQLLPASQSTQLPCSS
SPQETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNA
GYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGA
DPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQGRNDDDASGTWDFYGSSVCEPDDES
GYDVLANPPGPEDQDDDDDAYSDVFEFEFSETPLLPCYNIQVSVAQGPRNWLLLSDVL
KKLKMSSRIFRCNFPNVEIVTIAEAEFYRQVSASLLFSCSKDLEAFNPESKELLDLVE
FTNEIQTLLGSSVEWLHPSDLASDNYW"
misc_feature 205..477
/gene="BCOR"
/gene_synonym="FLJ20285"
/gene_synonym="KIAA1575"
/note="Arp; Region: FOG: Ankyrin repeat [General function
prediction only]"
/db_xref="CDD:COG0666"
BASE COUNT 555 a 401 c 416 g 581 t
ORIGIN
1 cggagattca gaaagcggcc ggagcccagt tcggactatg atctgtcacc agccaagcag
61 gagccaaagc ccttcgaccg cttgcagcaa ctgctaccag cctcccagtc cacacagctg
121 ccatgctcaa gttcccctca ggagaccacc cagtctcgcc ctatgccgcc ggaagcacgg
181 agacttattg tcaataagaa cgctggcgag acccttctgc agcgggcagc caggcttggc
241 tatgaggaag tggtcctgta ctgcttagag aacaagattt gtgatgtaaa tcatcgggac
301 aacgcaggtt actgcgccct gcatgaagct tgtgctaggg gctggctcaa cattgtgcga
361 cacctccttg aatatggcgc tgatgtcaac tgtagtgccc aggatggaac caggcctctg
421 cacgatgctg ttgagaacga tcacttggaa attgtccgac tacttctctc ttatggtgct
481 gaccccacct tggctacgta ctcaggtaga accatcatga aaatgaccca cagtgaactt
541 atggaaaagt tcttaacaga ttatttaaat gacctccagg gtcgcaatga tgatgacgcc
601 agtggcactt gggacttcta tggcagctct gtttgtgaac cagatgatga aagtggctat
661 gatgttttag ccaacccccc aggaccagaa gaccaggatg atgatgacga tgcctatagc
721 gatgtgtttg aatttgaatt ttcagagacc cccctcttac cgtgttataa catccaagta
781 tctgtggctc aggggccacg aaactggcta ctgctttcgg atgtccttaa gaaattgaaa
841 atgtcctccc gcatatttcg ctgcaatttt ccaaacgtgg aaattgtcac cattgcagag
901 gcagaatttt atcggcaggt ttctgcaagt ctcttgttct cttgctccaa agacctggaa
961 gccttcaacc ctgaaagtaa ggagctgtta gatctggtgg aattcacgaa cgaaattcag
1021 actctgctgg gctcctctgt agagtggctc caccccagtg atctggcctc agacaactac
1081 tggtgagcaa gctggaccca ccatgtacag tgtgttatag tgttaatcct tgtgcatatg
1141 tgtcataata caactatttc tgtaaagaaa ggacactatt acatatgaaa atatctcttc
1201 tttatataag agaaattact ccagtcagaa ggacttagaa acatgttttt ttccttttaa
1261 acttttaagt cagtttttat gaagttgtta taatgtttct ttacttttca atgcacacat
1321 gctttgggat acgtttgttt ttacttggaa catttgtttc ttttcttttt taaggagaaa
1381 aaaaaatgag taaaaggagc tccacacttt gacttaattt catacaaagc tctgatgaca
1441 ggccatgact gtagagtggt cagaactgtg tggttggttt gagggagcga attcggggaa
1501 ggcacttggt gatataactt tgttttgttt acagagtacc tgctcgggcc aggtaaatgc
1561 tattggatgt aatccagtag tgtgtaatat aaattcaaac catatccaca cacaacaact
1621 aattgtatga aacttttata tcctaattta aaagctgtga aattagtttt cacgcatcaa
1681 accggattgt ttatatgttt aaacatttta tgctcttatt taaagaagac tttgagctat
1741 ttttttctgt accctgtaaa atattgaaaa ctaacataat atgttgaggt tgcttggaaa
1801 tgtacataaa actaaaattt tctgaatcgt gtgtttatgt ttgaaatctg tgttttaact
1861 ttgtaagtaa attctctgcc tttgtattta tattttacaa aaattttctt aaaaggcaat
1921 aaaactgttg aggaaaggaa aaaaaaaaaa aaa
//