LOCUS BC009553 1598 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens golgi associated PDZ and coiled-coil motif containing,
mRNA (cDNA clone MGC:10098 IMAGE:3898495), complete cds.
ACCESSION BC009553
VERSION BC009553.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1598)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1598)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC009553.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62868211.
FEATURES Location/Qualifiers
source 1..1598
/db_xref="H-InvDB:HIT000034433"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10098 IMAGE:3898495"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1598
/gene="GOPC"
/gene_synonym="CAL"
/gene_synonym="dJ94G16.2"
/gene_synonym="FIG"
/gene_synonym="GOPC1"
/gene_synonym="PIST"
/db_xref="GeneID:57120"
/db_xref="HGNC:HGNC:17643"
/db_xref="MIM:606845"
CDS 190..1554
/gene="GOPC"
/gene_synonym="CAL"
/gene_synonym="dJ94G16.2"
/gene_synonym="FIG"
/gene_synonym="GOPC1"
/gene_synonym="PIST"
/codon_start=1
/product="golgi associated PDZ and coiled-coil motif
containing"
/protein_id="AAH09553.1"
/db_xref="GeneID:57120"
/db_xref="HGNC:HGNC:17643"
/db_xref="MIM:606845"
/translation="MSAGGPCPAAAGGGPGGASCSVGAPGGVSMFRWLEVLEKEFDKA
FVDVDLLLGEIDPDQADITYEGRQKMTSLSSCFAQLCHKAQSVSQINHKLEAQLVDLK
SELTETQAEKVVLEKEVHDQLLQLHSIQLQLHAKTGQSADSGTIKAKLERELEANKKE
KMKEAQLEAEVKLLRKENEALRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGR
DMKGPAHDKLWNQLEAEIHLHRHKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVG
PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGV
NLRDTKHKEAVTILSQQRGEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEG
GGNPGASCKDTSGEIKVLQGFNKKAVTDTHENGDLGTASETPLDDGASKLDDLHTLYH
KKSY"
BASE COUNT 468 a 334 c 445 g 351 t
ORIGIN
1 tgccgcctca gcttcagcct cgttactcct gcggttctgt gactgtgctg ctggcgttaa
61 cggcgcgagg tgaagggagg tgacggagtg tgcccgcgcg cgcgggggtc ccctcagtcc
121 cagcagttcc cttcgtgcgc ggggggcggc gagggtcttc agcagtcggg agaggccctt
181 gacggcgcca tgtcggcggg cggtccatgc ccagcagcag ccggaggggg cccagggggc
241 gcctcctgct ccgtgggggc ccctggcggg gtatccatgt tccggtggct ggaggtgctg
301 gagaaggagt tcgacaaagc ttttgtggat gtggatctgc tcctgggaga gatcgatcca
361 gaccaagcgg acatcactta tgaggggcga cagaagatga ccagcctgag ctcctgcttt
421 gcacagcttt gccacaaagc ccagtctgtg tctcaaatca accacaagct ggaggcacag
481 ttggtggatc tgaaatctga actgacagaa acccaagcag agaaagttgt tttggagaaa
541 gaagtacatg atcagctttt acagctgcac tctattcagc tgcagcttca tgctaaaact
601 ggtcaaagtg ctgactctgg taccattaag gcaaaattgg aaagagagct tgaggcaaac
661 aaaaaagaaa aaatgaaaga agcacaactt gaagctgaag tgaaattgtt gagaaaagag
721 aatgaagccc ttcgtagaca tatagctgtt ctccaggctg aagtatatgg ggcgagacta
781 gctgccaagt acttggataa ggaactggca ggaagggtcc aacagataca attgctagga
841 cgagatatga agggacctgc tcatgataag ctttggaacc aattagaagc tgaaatacat
901 ttgcatcgtc acaaaactgt gatccgagcc tgcagaggac gtaatgactt gaaacgacca
961 atgcaagcac caccaggcca tgatcaagat tccctaaaga aaagccaagg tgttggtcca
1021 attagaaaag ttctcctcct taaggaagat catgaaggcc ttggcatttc aattacaggt
1081 gggaaagaac atggtgttcc aatcctcatc tctgagatcc atccggggca acctgctgat
1141 agatgcggag ggctgcacgt tggggatgct attttggcag tcaacggagt taacctaagg
1201 gacacaaagc ataaagaagc tgtaactatt ctttctcagc agagaggaga gattgaattt
1261 gaagtagttt atgtggctcc tgaagtggat tctgatgatg aaaacgtaga gtatgaagat
1321 gagagtggac atcgttaccg tttgtacctt gatgagttag aaggaggtgg taaccctggt
1381 gctagttgca aagacacaag tggggaaatc aaagtattac aaggatttaa taagaaggca
1441 gtaactgaca cacatgaaaa tggagacctg ggcactgcaa gtgaaactcc gctagatgac
1501 ggtgcttcaa aattagatga tctgcacact ctgtatcata aaaaatctta ttaaattgac
1561 catatctcca gacaagattg ttaaaaaaaa aaaaaaaa
//