LOCUS BC009418 1644 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chondrolectin, mRNA (cDNA clone MGC:15027
IMAGE:3509743), complete cds.
ACCESSION BC009418
VERSION BC009418.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1644)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1644)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20127635.
FEATURES Location/Qualifiers
source 1..1644
/db_xref="H-InvDB:HIT000034351"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15027 IMAGE:3509743"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1644
/gene="CHODL"
/gene_synonym="FLJ12627"
/gene_synonym="MT75"
/gene_synonym="PRED12"
/db_xref="GeneID:140578"
/db_xref="HGNC:HGNC:17807"
/db_xref="MIM:607247"
CDS 362..1183
/gene="CHODL"
/gene_synonym="FLJ12627"
/gene_synonym="MT75"
/gene_synonym="PRED12"
/codon_start=1
/product="chondrolectin"
/protein_id="AAH09418.1"
/db_xref="GeneID:140578"
/db_xref="HGNC:HGNC:17807"
/db_xref="MIM:607247"
/translation="MSRVVSLLLGAALLCGHGAFCRRVVSGQKVCFADFKHPCYKMAY
FHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIG
LWRNGDGQTSGACPDLYQWSDGSNSQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGP
YLYQWNDDRCNMKHNYICKYEPEINPTAPVEKPYLTNQPGDTHQNVVVTEAGIIPNLI
YVVIPTIPLLLLILVAFGTCCFQMLHKSKGRTKTSPNQSTLWISKSTRKESGMEV"
BASE COUNT 460 a 377 c 414 g 393 t
ORIGIN
1 ccggctcagc ctctcacttg tcagaggccg gggaagagaa gcaaagcgca acggtgtggt
61 ccaagccggg gcttctgctt cgcctctagg acatacacgg gaccccctaa cttcagtccc
121 ccaaacgcgc accctcgaag tcttgaactc cagccccgca catccacgcg cggcacaggc
181 gcggcaggcg gcaggtcccg gccgaaggcg atgcgcgcag ggggtcgggc agctgggctc
241 gggcggcggg agtagggccc ggcagggagg cagggaggct gcagagtcag agtcgcgggc
301 tgcgccctgg gcagaggccg ccctcgctcc acgcaacacc tgctgctgcc accgcgccgc
361 gatgagccgc gtggtctcgc tgctgctggg cgccgcgctg ctctgcggcc acggagcctt
421 ctgccgccgc gtggtcagcg gccaaaaggt gtgttttgct gacttcaagc atccctgcta
481 caaaatggcc tacttccatg aactgtccag ccgagtgagc tttcaggagg cacgcctggc
541 ttgtgagagt gagggaggag tcctcctcag ccttgagaat gaagcagaac agaagttaat
601 agagagcatg ttgcaaaacc tgacaaaacc cgggacaggg atttctgatg gtgatttctg
661 gatagggctt tggaggaatg gagatgggca aacatctggt gcctgcccag atctctacca
721 gtggtctgat ggaagcaatt cccagtaccg aaactggtac acagatgaac cttcctgcgg
781 aagtgaaaag tgtgttgtga tgtatcacca accaactgcc aatcctggcc ttgggggtcc
841 ctacctttac cagtggaatg atgacaggtg taacatgaag cacaattata tttgcaagta
901 tgaaccagag attaatccaa cagcccctgt agaaaagcct tatcttacaa atcaaccagg
961 agacacccat cagaatgtgg ttgttactga agcaggtata attcccaatc taatttatgt
1021 tgttatacca acaatacccc tgctcttact gatactggtt gcttttggaa cctgttgttt
1081 ccagatgctg cataaaagta aaggaagaac aaaaactagt ccaaaccagt ctacactgtg
1141 gatttcaaag agtaccagaa aagaaagtgg catggaagta taataactca ttgacttggt
1201 tccagaattt tgtaattctg gatctgtata aggaatggca tcagaacaat agcttggaat
1261 ggcttgaaat cacaaaggat ctgcaagatg aactgtaagc tcccccttga ggcaaatatt
1321 aaagtaattt ttatatgtct attatttcat ttaaagaata tgctgtgcta ataatggagt
1381 gagacatgct tattttgcta aaggatgcac ccaaacttca aacttcaagc aaatgaaatg
1441 gacaatgcag ataaagttgt tatcaacacg tcgggagtat gtgtgttaga agcaattcct
1501 tttatttctt tcacctttca taagttgtta tctagtcaat gtaatgtata ttgtattgaa
1561 atttacagtg tgcaaaagta ttttaccttt gcataagtgt ttgataaaaa tgaactgttc
1621 taataaaaaa aaaaaaaaaa aaaa
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