LOCUS BC009412 1503 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens paired-like homeodomain 1, mRNA (cDNA clone MGC:10891
IMAGE:3622592), complete cds.
ACCESSION BC009412
VERSION BC009412.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1503)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1503)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24234701.
FEATURES Location/Qualifiers
source 1..1503
/db_xref="H-InvDB:HIT000034348"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10891 IMAGE:3622592"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1503
/gene="PITX1"
/gene_synonym="POTX"
/gene_synonym="PTX1"
/db_xref="GeneID:5307"
/db_xref="HGNC:HGNC:9004"
/db_xref="MIM:602149"
CDS 329..1273
/gene="PITX1"
/gene_synonym="POTX"
/gene_synonym="PTX1"
/codon_start=1
/product="paired-like homeodomain 1"
/protein_id="AAH09412.1"
/db_xref="GeneID:5307"
/db_xref="HGNC:HGNC:9004"
/db_xref="MIM:602149"
/translation="MDAFKGGMSLERLPEGLRPPPPPPHDMGPAFHLARPADPREPLE
NSASESSDTELPEKERGGEPKGPEDSGAGGTGCGGADDPAKKKKQRRQRTHFTSQQLQ
ELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGY
VPQFSGLVQPYEDVYAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMSPLSSQSMFSAPS
SISSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRD
TCNSSLASLRLKSKQHSSFGYGGLQGPASGLNACQYNS"
BASE COUNT 271 a 566 c 486 g 180 t
ORIGIN
1 ccgtccggag ccttagaaac cggccccgga tcgcgagccg gagccggagc cggagccggg
61 gccggccggg ctgctgaggc ccgagcggca ggagcgcagc gcggagcgct gagccaggcg
121 cccagtcgcg agaagctgcc gccgcctctg cccgcccggc gccgcagccc cgggcggtcc
181 atggggcggg cacggcgtcg ctgcaggcgc cggcagccct ggagggcagc cgcttaggcg
241 ctgcgctctt gtccccgcag gtcgcagcca gggcggcggg gcgcgcccag ccccggcccc
301 tggagcgccc gccgcggtcc ccacctccat ggacgccttc aaggggggca tgagcctgga
361 gcggctgccg gaggggctcc ggccgccgcc gccgccaccc catgacatgg ggcccgcctt
421 ccacctggcc cggcccgccg acccccgcga gccgctcgag aactccgcca gcgagtcgtc
481 tgacacggag ctgccagaga aggagcgcgg cggggaaccc aaggggcccg aggacagtgg
541 tgcgggaggc acgggctgcg gcggcgcaga cgacccagcc aagaagaaga agcagcggcg
601 gcaacgtacg cacttcacaa gccagcagtt gcaagagcta gaggccacgt tccagaggaa
661 ccgctacccc gacatgagca tgagggagga gatcgccgtg tggaccaacc tcaccgagcc
721 gcgcgtgcgg gtctggttca agaaccggcg agccaagtgg cgtaagcgcg agcgtaacca
781 gcagctggac ctgtgcaagg gtggctacgt gccgcagttc agcggcctag tgcagcccta
841 cgaggacgtg tacgccgccg gctactccta caacaactgg gccgccaaga gcctggcgcc
901 agcgccgctc tccaccaaga gcttcacctt cttcaactcc atgagcccgc tgtcgtcgca
961 gtccatgttc tcagcaccca gctccatctc ctccatgacc atgccgtcca gcatgggccc
1021 aggcgccgtg cctggcatgc ccaactcggg cctcaacaac atcaacaacc tcaccggctc
1081 ctcgctcaac tcggccatgt cgccgggcgc ttgcccgtac ggcactcccg cctcgcccta
1141 cagcgtctac cgggacacgt gcaactcgag cctagccagc ctgcggctca agtccaaaca
1201 gcactcgtcg tttggctacg gcggcctgca gggcccggcc tcgggcctca acgcgtgcca
1261 gtacaacagc tgaccgcccc gccgcaccac gcgggccggc ggccggagcg gggaagggcg
1321 cgggcgcggg cgcggaggac gcacgcgggg ccccggctcg caagccccag ctcaccgcgc
1381 cgcggacctc acacctgcgc agccccctcc tcccacttcc cactccgggt tggttttgtg
1441 tttgcttttc cggaccccac tctgccctcc aaaaagccaa aaaaaaaaaa aaaaaaaaaa
1501 aaa
//