LOCUS BC009379 1792 bp mRNA linear HUM 09-DEC-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, mRNA (cDNA
clone IMAGE:4125275), partial cds.
ACCESSION BC009379
VERSION BC009379.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1792)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1792)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC009379.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: f Column: 7.
FEATURES Location/Qualifiers
source 1..1792
/db_xref="H-InvDB:HIT000034321"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4125275"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1792
/gene="DDX47"
/gene_synonym="DKFZp564O176"
/gene_synonym="FLJ30012"
/gene_synonym="HQ0256"
/db_xref="GeneID:51202"
CDS <1..1353
/gene="DDX47"
/gene_synonym="DKFZp564O176"
/gene_synonym="FLJ30012"
/gene_synonym="HQ0256"
/codon_start=1
/product="DDX47 protein"
/protein_id="AAH09379.2"
/db_xref="GeneID:51202"
/translation="EHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTK
IQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQ
ISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL
RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNP
VKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTAL
LLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFD
IPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVM
MLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
"
misc_feature 61..666
/gene="DDX47"
/gene_synonym="DKFZp564O176"
/gene_synonym="FLJ30012"
/gene_synonym="HQ0256"
/note="DEADc; Region: DEAD-box helicases. A diverse family
of proteins involved in ATP-dependent RNA unwinding,
needed in a variety of cellular processes including
splicing, ribosome biogenesis and RNA degradation. The
name derives from the sequence of the Walker B motif
(motif II). This domain contains the ATP- binding region"
/db_xref="CDD:cd00268"
BASE COUNT 522 a 373 c 409 g 488 t
ORIGIN
1 gaacacgatt ctccgaccga agcgtcccag ccgattgtgg aagaggagga aactaaaaca
61 tttaaagacc tgggtgtgac agatgtgttg tgtgaagctt gtgaccagtt gggatggaca
121 aaacccacca agatccagat tgaagctatt cctttggcct tacaaggtcg tgatatcatt
181 gggcttgcag aaactggctc tggaaagaca ggcgcctttg ctttgcccat tctaaacgca
241 ctgctggaga ccccgcagcg tttgtttgcc ctagttctta ccccgactcg ggagctggcc
301 tttcagatct cagagcagtt tgaagccctg gggtcctcta ttggagtgca gagtgctgtg
361 attgtaggtg gaattgattc aatgtctcaa tctttggccc ttgcaaaaaa accacatata
421 ataatagcaa ctcctggtcg actgattgac cacttggaaa atacgaaagg tttcaacttg
481 agagctctca aatacttggt catggatgaa gccgaccgaa tactgaatat ggattttgag
541 acagaggttg acaagatcct caaagtgatt cctcgagatc ggaaaacatt cctcttctct
601 gccaccatga ccaagaaggt tcaaaaactt cagcgagcag ctctgaagaa tcctgtgaaa
661 tgtgccgttt cctctaaata ccagacagtt gaaaaattac agcaatatta tatttttatt
721 ccctctaaat tcaaggatac ctacctggtt tatattctaa atgaattggc tggaaactcc
781 tttatgatat tctgcagcac ctgtaataat acccagagaa cagctttgct actgcgaaat
841 cttggcttca ctgccatccc cctccatgga caaatgagtc agagtaagcg cctaggatcc
901 cttaataagt ttaaggccaa ggcccgttcc attcttctag caactgacgt tgccagccga
961 ggtttggaca tacctcatgt agatgtggtt gtcaactttg acattcctac ccattccaag
1021 gattacatcc atcgagtagg tcgaacagct agagctgggc gctccggaaa ggctattact
1081 tttgtcacac agtatgatgt ggaactcttc cagcgcatag aacacttaat tgggaagaaa
1141 ctaccaggtt ttccaacaca ggatgatgag gttatgatgc tgacagaacg cgtcgctgaa
1201 gcccaaaggt ttgcccgaat ggagttaagg gagcatggag aaaagaagaa acgctcgcga
1261 gaggatgctg gagataatga tgacacagag ggtgctattg gtgtcaggaa caaggtggct
1321 ggaggaaaaa tgaagaagcg gaaaggccgt taatcacttt tatgaaggct cgagttctgc
1381 tgttctgtaa aagagaattg gagaatgaaa cctgctccaa cagagatcat gagactgaaa
1441 ttggtcagaa ttgtgtccag aatgtgctca gctaattcag tattcttccc cattctgggt
1501 tggagtttac tgcagagtaa ttcttacagt gctgatgtca agactgttac tgttcttcga
1561 ctttgattcc ttgctcatga catgagtagg gtgtgctctt ctgtcacttc acacagacct
1621 tttgcctttt ttagctgcaa gtcaaggact aggttgatga tgcccatgac ctgtaattgt
1681 aaagaagctt ggacatctgc aaatgatatt taaaccatct tggcttgtgc tttattcaaa
1741 ctaatgtgaa acaataaatt taaatattat ttttaaaaaa aaaaaaaaaa aa
//