LOCUS BC009373 1616 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens phytanoyl-CoA dioxygenase domain containing 1, mRNA
(cDNA clone MGC:16638 IMAGE:4121964), complete cds.
ACCESSION BC009373
VERSION BC009373.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1616)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1616)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009373.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: d Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222242.
FEATURES Location/Qualifiers
source 1..1616
/db_xref="H-InvDB:HIT000034316"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16638 IMAGE:4121964"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1616
/gene="PHYHD1"
/gene_synonym="MGC16638"
/db_xref="GeneID:254295"
/db_xref="HGNC:HGNC:23396"
CDS 421..1314
/gene="PHYHD1"
/gene_synonym="MGC16638"
/codon_start=1
/product="phytanoyl-CoA dioxygenase domain containing 1"
/protein_id="AAH09373.1"
/db_xref="GeneID:254295"
/db_xref="HGNC:HGNC:23396"
/translation="MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMD
VPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINK
IGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKSPLIRTPPSCTRSPW
AGCWACGSQWRMPRWRTAVSGSSLAPTPVVCQGGWSGPLLAQRLVPASLGQSQPGITA
SLCPPQCREGPWSSSMEKWYTRASRTSLTARARPTLSTSWRPLAPPGARRTGSSQQLN
CPFPNCTPKGSRRAGALAPPG"
BASE COUNT 331 a 500 c 435 g 350 t
ORIGIN
1 cctgcctcag cctcgcgagc agctgggact acaggtgccc gccaccacgc ccggctaatt
61 ttttgtattt ttagtagaga cggggtttca ccgtgttagc caggatggtc tcgatttcct
121 gacctcgtga tccgcgcgcc tctgcctcca aagtgctggg attacaggcc cgagccgccg
181 cacccggcct gcaggtgttg ttctgacccc agctccactg tgccagcccg acttgagatg
241 ccaagtatct tgggcctgag gattgaggcc tagagagagg caggcgttcc tcagagtcac
301 agggaatggc ggcgcctgga ctgggactca gcccagctgc ttggcctgac cctctcacag
361 cataatttcc cggcacctgg aggccgcgct tagaagccgc ccagtgccct gagcgtctcc
421 atggcctgcc tgagcccctc gcagctccag aagttccaac aggatggatt cctggtgctg
481 gaaggattct tgtctgcaga agagtgtgtg gccatgcaac aaaggattgg cgagatagtg
541 gctgaaatgg atgttcctct ccactgccgc acagaattct ccacccagga agaggagcag
601 cttcgagccc agggcagcac agactatttc ttgagcagtg gtgacaagat tcgattcttc
661 tttgagaaag gcgtttttga tgagaaagga aatttcctgg tccctccgga gaaatccatc
721 aacaaaattg gccacgctct gcacgcccac gaccccgtct tcaagagcat cacacactcc
781 ttcaaggtgc agaccttggc cagaagtctg ggcctccaga tgcccgtggt ggtgcagagc
841 atgtacatct ttaagtctcc cctcatcagg acgcctcctt cctgtacacg gagcccctgg
901 gccgggtgct gggcgtgtgg atcgcagtgg aggatgccac gctggagaac ggctgtctct
961 ggttcatccc tggctcccac accagtggtg tgtcaaggag gatggtccgg gcccctgttg
1021 gctcagcgcc tggtaccagc ttccttgggt cagagccagc ccgggataac agcctctttg
1081 tgcccacccc agtgcagaga ggggccctgg tcctcatcca tggagaagtg gtacacaaga
1141 gcaagcagaa cctctctgac cgctcgcgcc aggcctacac tttccacctc atggaggcct
1201 ctggcaccac ctggagcccg gagaactggc tccagccaac agctgaactg ccctttcccc
1261 aactgtacac ctaaaggctc tcgcagggca ggagccctcg cccctcccgg gtgaagctgt
1321 gggctgtaaa caccagtgcc ttgctcagcc tcctggttgc aacagggagg tcttgtctcc
1381 cctcctgggc tttcctcctg ccctgtgggc agcagcctag gctgggtcag gggcttccct
1441 aagatcttca cctctctgcc tccctactgc cccaacatag ccttgaggag gcttctcagc
1501 caccaaaggg ttctggcccc ttctcactct cctctcctct cagatggaac tctggttatt
1561 atggtgttag ttatcgaata aaaacgactt cagaatgcaa aaaaaaaaaa aaaaaa
//