LOCUS BC009355 2512 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens valyl-tRNA synthetase 2, mitochondrial (putative),
mRNA (cDNA clone IMAGE:4298611), partial cds.
ACCESSION BC009355
VERSION BC009355.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2512)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2512)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC009355.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: m Column: 24.
FEATURES Location/Qualifiers
source 1..2512
/db_xref="H-InvDB:HIT000034302_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4298611"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2512
/gene="VARS2"
/db_xref="GeneID:57176"
/db_xref="HGNC:HGNC:21642"
CDS <1..2204
/gene="VARS2"
/codon_start=3
/product="VARS2 protein"
/protein_id="AAH09355.2"
/db_xref="GeneID:57176"
/db_xref="HGNC:HGNC:21642"
/translation="EVVVGTTRPETLPGDVAVAVHPDDSRYTHLHGRQLRHPLMGQPL
PLITDYAVQPHVGTGAVKVTPAHSPADAEMGARHGLSPLNVIAEDGTMTSLCGDWLQG
LHRFVAREKIMSVLSERGLFRGLQNHPMVLPICSRSGDVIEYLLKNQWFVRCQEMGAR
AAKAVESGALELSPSFHQKNWQHWFSHIGDWCVSRQLWWGHQIPAYLVVEDHAQGEED
CWVVGRSEAEAREVAAELTGRPGAELTLERDPDVLDTWFSSALFPFSALGWPQETPDL
ARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFSKVLLHPMVRDRQGRKMSKSLG
NVLDPRDIISGVEMQLLQEKLRSGNLDPAELAIVAAAQKKDFPHGIPECGTDALRFTL
CSHGVQAGDLHLSVSEVQSCRHFCNKIWNALRFILNALGEKFVPQPAEELSPSSPMDA
WILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYLEAVKPVLWHSPRPLGP
PQVLFSCADLGLRLLAPLMPFLAEELWQRLPPRPGCPPAPSISVAPYPSACSLEHWRQ
PELERRFSRVQEVVQVLRALRATYQLTKARPRVLLQSSEPGDQGLFEAFLEPLGTLGY
CGAVGLLPPGTAAPSGWAQAPLSDTAQVYMELQGLVDPQIQLPLLAARRYKLQKQLDS
LTARTPSEGEAGTQRQQKLSSLQLELSKLDKAASHLRQLMDEPPAPGSPEL"
BASE COUNT 524 a 740 c 733 g 515 t
ORIGIN
1 cagaggttgt ggtaggaacc acaaggccag agacgctgcc tggagatgtg gctgtggccg
61 ttcatccaga cgactcgcga tacacacatc tacacgggcg acagcttcgt caccccttga
121 tggggcagcc tcttcccctc atcacagact atgctgttca gccacatgtg ggcacggggg
181 cagtgaaggt gactccagct cacagtcctg ccgatgctga gatgggggcc cgacatggct
241 tgagcccctt gaatgtcatt gcggaggatg ggaccatgac ctccctctgc ggggactggt
301 tgcagggtct tcaccggttt gtggcccggg aaaagataat gtctgtgctg agtgaacggg
361 gcctattccg gggcctccag aaccacccca tggtactgcc catctgcagc cgttctgggg
421 atgtgataga atacctgctg aagaaccagt ggtttgtccg ctgccaggaa atgggggccc
481 gagctgccaa ggctgtggag tcgggggccc tggagctcag tccctccttc caccagaaga
541 actggcagca ctggttttcc catattgggg actggtgtgt ctcccggcag ctgtggtggg
601 gccatcagat tccagcctac ctggttgtag aggaccatgc gcagggagaa gaggactgtt
661 gggtggttgg gcggtcagag gctgaggcca gagaggtagc agcggaactg acagggaggc
721 caggggcaga gctgaccctg gagagggatc ctgatgtcct agacacatgg ttttcttctg
781 ccctgttccc cttttctgcc ctgggctggc cccaagagac cccagacctt gctcgtttct
841 accccctgtc acttttggaa acgggcagcg accttctgct gttctgggtg ggccgcatgg
901 tcatgttggg gacccagctc acagggcagc tgcccttcag caaggtgctt cttcatccca
961 tggttcggga caggcagggc cggaagatga gcaagtccct ggggaatgtg ctggacccaa
1021 gagacatcat cagtggggtg gagatgcagt tgctgcagga aaagctgaga agcggaaatt
1081 tggaccctgc agagctggcc attgtggctg cagcacagaa aaaggacttt cctcacggga
1141 tccctgagtg tgggacagat gccctgagat tcacactctg ctcccatgga gttcaggcgg
1201 gcgacttgca cctgtcagtc tctgaggtcc agagctgccg acatttctgc aacaagatct
1261 ggaatgctct tcgctttatc ctcaatgctt taggggagaa atttgtgcca cagcctgctg
1321 aggagctgtc tccctcctcc ccgatggatg cctggatcct gagccgcctt gccctggctg
1381 cccaggagtg tgagcggggc ttcctcaccc gagagctctc gctcgtcact catgccctgc
1441 accacttctg gcttcacaac ctctgtgacg tctacctgga ggctgtgaag cccgtgctgt
1501 ggcactcgcc ccgccccctg gggccccctc aggtcctgtt ctcctgcgct gacctcggcc
1561 tccgcctcct ggccccactg atgcccttcc tggctgaaga gctctggcag aggctgcccc
1621 ccaggcctgg ttgcccccct gcccccagca tctcggttgc cccctaccct agcgcctgca
1681 gcttggagca ctggcgccag ccagagctgg agcggcgctt ctcccgggtc caagaggtcg
1741 tgcaggtgct aagggctctc cgagccacgt accagctcac caaagcccgg ccccgagtgc
1801 tgctgcagag ctcagagcct ggggaccagg gcctcttcga ggccttcttg gagcccctgg
1861 gcaccctggg ctactgtggg gctgtgggcc tgttaccccc aggcacagca gctccctccg
1921 gctgggccca ggctccactc agtgacacgg ctcaagtcta catggagctg cagggcctgg
1981 tggacccgca gatccagcta cctctgttag ccgcccgaag gtacaagttg cagaagcagc
2041 ttgatagcct cacagccagg accccatcag aaggggaggc agggactcag aggcaacaaa
2101 agctttcttc cctccagctg gaattgtcaa aactggacaa ggcagcctct cacctccggc
2161 agctgatgga tgagcctcca gccccaggga gcccggagct ctaactcatc atccccatca
2221 gttttcctcc ctctcagacc tgtctttgag gacaaacaga tttgtcagct gtcagggtgc
2281 agtgggacgt cagagactat gtggtccatc gccttcattg tgtaaatgag gacacagact
2341 ggcttggtcg cagtgactgt ggtgtccttg agatgctcac attactgccc ggcctgcctc
2401 ccacctggaa gtctgggaat gaggagattg agataaactt ttgaaatccc aaaaaaaaaa
2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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