LOCUS BC009343 2875 bp mRNA linear HUM 23-DEC-2003 DEFINITION Homo sapiens plexin A2, mRNA (cDNA clone IMAGE:4130636), partial cds. ACCESSION BC009343 VERSION BC009343.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2875) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2875) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 19, 2003 this sequence version replaced BC009343.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 26 Row: k Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..2875 /db_xref="H-InvDB:HIT000087260" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4130636" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_19" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2875 /gene="PLXNA2" /gene_synonym="FLJ11751" /gene_synonym="KIAA0463" /gene_synonym="OCT" /gene_synonym="PLXN2" /db_xref="GeneID:5362" /db_xref="MIM:601054" CDS <1..2433 /gene="PLXNA2" /gene_synonym="FLJ11751" /gene_synonym="KIAA0463" /gene_synonym="OCT" /gene_synonym="PLXN2" /codon_start=1 /product="PLXNA2 protein" /protein_id="AAH09343.2" /db_xref="GeneID:5362" /db_xref="MIM:601054" /translation="VVCKVVNTTTLTCLAPSLTTDYRPGLDTVERPDEFGFVFNNVQS LLIYNDTKFIYYPNPTFELLSPTGVLDQKPGSPIILKGKNLCPPASGGAKLNYTVLIG ETPCAVTVSETQLLCEPPNLTGQHKVMVHVGGMVFSPGSVSVISDSLLTLPAIVSIAA GGSLLLIIVIIVLIAYKRKSRENDLTLKRLQMQMDNLESRVALECKEAFAELQTDINE LTSDLDRSGIPYLDYRTYAMRVLFPGIEDHPVLRELEVQGNGQQHVEKALKLFAQLIN NKVFLLTFIRTLELQRSFSMRDRGNVASLIMTGLQGRLEYATDVLKQLLSDLIDKNLE NKNHPKLLLRRTESVAEKMLTNWFAFLLHKFLKECAGEPLFMLYCAIKQQMEKGPIDA ITGEARYSLSEDKLIRQQIEYKTLILNCVNPDNENSPEIPVKVLNCDTITQVKEKILD AVYKNVPYSQRPRAVDMDLEWRQGRIARVVLQDEDITTKIEGDWKRLNTLMHYQVSDR SVVALVPKQTSSYNIPASASISRTSISRYDSSFRYTGSPDSLRSRAPMITPDLESGVK VWHLVKNHDHGDQKEGDRGSKMVSEIYLTRLLATKGTLQKFVDDLFETLLSTVHRGSA LPLAIKYMFDFLDEQADRHSIHDTDVRHTWKSNCLPLRFWVNVIKNPQFVFDIHKGSI TDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPSYKSWVERYYADIAKLPAI SDQDMNAYLAEQSRLHAVEFNMLSALNEIYSYVSKYSEELIGALEQDEQARRQRLAYK VEQLINAMSIES" misc_feature 175..429 /gene="PLXNA2" /gene_synonym="FLJ11751" /gene_synonym="KIAA0463" /gene_synonym="OCT" /gene_synonym="PLXN2" /note="TIG; Region: IPT/TIG domain. This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members" /db_xref="CDD:pfam01833" BASE COUNT 703 a 831 c 767 g 574 t ORIGIN 1 gtggtgtgta aagttgtgaa cacaaccacc ctcacctgcc tggcaccctc tctgaccacg 61 gactaccgcc ctggcctgga cactgtggaa cgcccagatg agtttggatt tgtctttaac 121 aatgtccaat ccttgctaat ttacaacgac accaagttta tctactaccc caacccgacc 181 tttgaactgc ttagccctac tggagtcttg gatcaaaagc caggatcgcc catcattctg 241 aagggcaaaa acctctgccc tcctgcctct ggaggggcca aactcaacta cactgtgctc 301 atcggagaga ccccttgtgc tgtcaccgta tctgagaccc agcttctctg cgagcctccc 361 aacctcaccg ggcagcacaa ggtcatggtt cacgtgggcg ggatggtgtt ctcgcctggc 421 tcggtgagtg tcatctcaga cagcttgctg accctgccag ccatcgtcag catcgcggcc 481 ggcggcagcc tcctcctcat catcgtcatc atcgtcctca ttgcctacaa gcgcaagtct 541 cgagaaaatg acctcactct caagcggctg caaatgcaga tggacaatct ggagtcccgt 601 gtggctttgg agtgcaagga agcttttgct gagctccaga cggatatcaa tgagttgacc 661 agtgacctgg accgctcagg aatcccttac ctggactatc gtacctacgc tatgcgagtc 721 ctgttcccgg gcatcgagga ccaccccgtc ctgcgggagc tggaggtaca aggaaacggg 781 cagcagcacg tggagaaggc cctgaagctc tttgcccagc tcatcaacaa caaggtgttc 841 ctgctgacct tcatccgcac cctggagctg cagcgcagtt tctccatgcg cgaccggggc 901 aacgtggctt cgctcatcat gaccggcctg cagggccgcc tggaatatgc cactgatgtc 961 ctcaagcagc tgctctctga cctcatcgat aagaacctgg agaacaagaa ccaccccaag 1021 ctgctactcc ggaggacaga gtctgtggct gaaaagatgc tgaccaattg gttcgccttc 1081 ctcctgcaca agttcctaaa ggagtgcgca ggggagccac tcttcatgct atactgtgcc 1141 atcaagcagc agatggagaa gggccccatt gatgccatca cgggcgaggc ccgctactcc 1201 ctgagcgagg acaagctcat ccggcagcag atcgagtaca agaccctgat cctgaactgc 1261 gtcaaccctg acaacgagaa cagtccagag atcccagtga aggtgttaaa ctgtgacacc 1321 atcacacagg tcaaggagaa gattcttgat gccgtgtata agaatgtgcc ctattcccag 1381 cggccgaggg cagtggacat ggacttggag tggcgccaag gccggatcgc ccgggtcgtg 1441 ctgcaagatg aggacatcac caccaagatt gagggtgact ggaagcggct caacacactg 1501 atgcattatc aggtgtcaga caggtcggtg gtggctctgg tccccaaaca gacctcctcc 1561 tacaacatcc ctgcctctgc cagcatctcc cggacgtcca tcagcagata cgactcctcc 1621 ttcaggtata cgggcagccc cgacagcctg cggtcccggg ccccgatgat caccccagac 1681 ctggaaagtg gggtcaaggt gtggcatctg gtgaagaacc atgaccacgg tgaccagaag 1741 gagggtgacc ggggcagcaa gatggtgtcc gagatctacc tgacccggct actggccacc 1801 aagggcaccc tgcagaagtt tgtggacgac ttgtttgaga ccttgctcag cactgtgcac 1861 cggggcagcg ctctccccct ggccatcaag tacatgtttg atttcctaga tgagcaggca 1921 gacaggcaca gcatccatga cacagatgtg cggcacacct ggaaaagcaa ctgcctccct 1981 ctgcgcttct gggtgaacgt gattaagaac ccccagttcg tgtttgacat ccacaagggc 2041 agcatcacgg acgcctgcct ctctgtggtg gcccagacct tcatggactc ttgttcaacg 2101 tcagagcacc ggctgggcaa ggactccccc tccaacaagc tgctctatgc caaggacatc 2161 cccagctaca agagctgggt ggagagatac tacgcagaca tcgccaagct cccagccatc 2221 agtgaccagg acatgaatgc ctacctcgcc gagcagtccc gcctgcacgc cgtggagttc 2281 aacatgctga gtgccctcaa tgagatctac tcctatgtca gcaagtatag tgaggagctc 2341 atcggggccc tagagcagga tgagcaggca cggcggcagc ggctggctta taaggtggag 2401 cagctcatta atgccatgtc cattgagagc tgagaggagg agcctcgcat tcctgggaag 2461 agggacctgt ccaagctgtc acactgggag tctcagatgg aaggacaagt gatggggatc 2521 aggccccaga gcttgctgtc ccctgagacc ccatcctggg gagaggggag gactcctctc 2581 cctacgccag ccaagtttcg tcatagccag ttccagctgg gagagacagt gggcgtcgtc 2641 catcctcagt gagaacacca gagaacccgg ggccgggaga aggtggttct tcaagccgag 2701 aggcacgagc tggggacagt tctgcctctg tgactgctgc tttgcatgaa aactcatttg 2761 atgtatattg gggaaataat gagaacttta tttaattttt ttaagaaaaa gggaaaaaaa 2821 cagaaataaa acaaaaagcc gccctgttaa aaaaaataaa aaaaaaaaaa aaaaa //