LOCUS BC009323 3331 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens DiGeorge syndrome critical region gene 8, mRNA (cDNA
clone IMAGE:4123948), partial cds.
ACCESSION BC009323
VERSION BC009323.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3331)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3331)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC009323.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: e Column: 18.
FEATURES Location/Qualifiers
source 1..3331
/db_xref="H-InvDB:HIT000034282"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4123948"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3331
/gene="DGCR8"
/gene_synonym="DGCRK6"
/gene_synonym="Gy1"
/db_xref="GeneID:54487"
/db_xref="HGNC:HGNC:2847"
/db_xref="MIM:609030"
CDS <1..1554
/gene="DGCR8"
/gene_synonym="DGCRK6"
/gene_synonym="Gy1"
/codon_start=1
/product="DGCR8 protein"
/protein_id="AAH09323.2"
/db_xref="GeneID:54487"
/db_xref="HGNC:HGNC:2847"
/db_xref="MIM:609030"
/translation="APKKRRTEEKYGGDSDHPSDGETSVQPMMTKIKTVLKSRGRPPT
EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCLHYKKM
KDNEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAA
PGALGQVKAKVEVCKDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRK
QAESERPILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNF
FECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPK
DSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKN
QKSEYVMACGKHTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMV
KQETSDKSVIELQQYAKKNKPNLHILSKLQEEMKRLAEEREETRKKPKMSIVASAQPG
GEPLCTVDV"
BASE COUNT 805 a 858 c 925 g 743 t
ORIGIN
1 gcccccaaaa agaggcgaac agaggaaaaa tatggcggag acagcgacca tccgtccgat
61 ggagagacaa gtgtgcagcc gatgatgacc aagattaaaa cagtgctcaa aagtcgtggc
121 cgcccaccta cagagccgct gcccgacggg tggatcatga cattccataa ctctggagtc
181 ccggtgtacc tacacagaga gtctcgggtg gtcacctggt ccaggccata cttcttggga
241 acgggaagca tacggaaaca cgaccctcct ctgagtagca tcccttgtct gcattataag
301 aaaatgaagg acaacgagga acgggagcaa agcagtgacc tcacccctag tggggatgtg
361 tcccccgtca agcccctgag ccgatctgca gagctggagt ttcccctgga tgagcctgac
421 tctatgggtg ctgacccggg gcccccggac gagaaagacc cactaggggc tgaggcagcc
481 cctggggccc tggggcaggt gaaggccaaa gtcgaggtgt gcaaagatga atccgttgat
541 ctcgaggaat ttcgaagcta cctggagaag cgttttgact ttgagcaagt tactgtgaaa
601 aaattcagga cttgggctga gcggcggcaa ttcaatcggg aaatgaagcg gaagcaggcg
661 gagtccgaga ggcccatctt gccagccaat cagaagctca ttactttatc agtgcaagat
721 gcacccacaa agaaagagtt tgttattaac cccaacggga aatccgaggt ctgcatcctg
781 cacgagtaca tgcagcgtgt cctcaaggtc cgccctgtct ataatttctt tgaatgtgag
841 aacccaagtg agccttttgg tgcctcggtg accattgatg gtgtgactta cggatctgga
901 actgcaagca gcaaaaaact tgcgaagaat aaagctgccc gagctacact ggaaatcctc
961 atccctgact ttgttaaaca gacctctgaa gagaagccca aagacagtga agaactcgag
1021 tattttaacc acatcagcat cgaggactcg cgggtctacg agctgaccag caaggctggg
1081 ctgttgtctc catatcagat cctccacgag tgccttaaaa gaaaccatgg gatgggtgac
1141 acgtctatca agtttgaagt ggttcctggg aaaaaccaga agagtgaata cgtcatggcg
1201 tgtggcaagc acacagtgcg cgggtggtgt aagaacaaga gagttggaaa gcagttagcc
1261 tcacagaaga tccttcagct gctgcaccca catgtcaaga actgggggtc tttactgcgc
1321 atgtatggcc gtgagagcag caagatggtc aagcaggaga catcggacaa gagtgtgatt
1381 gagctgcagc agtatgccaa gaagaacaag cccaacctgc acatcctcag caagctccaa
1441 gaggagatga agaggctagc tgaggaaagg gaggagactc gaaagaagcc caagatgtcc
1501 attgtggcgt ccgcccagcc tggcggtgag cccctgtgca ccgtggacgt gtgagggagg
1561 tggcacgggc cagggcgcgg gggccgccag ccgcacttct gaggagacca gcagtcatgc
1621 atcgtgcacc acagtgtcag gcctccaacc cacgctcctt ccctgtggcc aacctgtggg
1681 cccggcctta gggtggaggc tttagtgtac agggacagcc atggccacac agcacacatg
1741 tggagcagcg gctctccctg gaaagctcca ggcctgaatg gatggactca gcgactgcac
1801 cagtggcagc tggtgactgt ggacagtggt ggaccctgct tctgtgcacc tgctgcaggc
1861 tctttttatg aaggctttca tgaattttag tatgtaatac gcactgacga cacatgatgc
1921 ttggatgaca gatgagaggg gatggctgag tcctgtggct ggcccgtgat gccaggtggc
1981 ccatgtgccc agggcgcctg cagggctgct acagggacct ggtcaggagg tgcacatggt
2041 gccctgccct cacccaccct ctgtgtttcc ccttctttga aaaggtagaa gagaaaggaa
2101 tattttaaac ctttttggct taaacagaat tttagcatca gaactagctt tctgggattg
2161 gaggcaaacc atcaaggtgg tccctctcca gtctggacac gatgccagca aggatgacgt
2221 cctgccacct cctggagtta ccctggcctc ctagggtccc tttttctgat gaagtcttaa
2281 tgccctaaaa gcgcctcttt ggacactgag gccctctctg cctttcctgg cctccggcaa
2341 cagtttttta caaagatttt ttgcagtcga gtccatatgt ccacccattg atttttaaag
2401 cttttgtgat attttagcat tttgaaagac tttcacagtg agagtagaag gtagatttgg
2461 aatcatgcat tttagcaagt ggacttgttg aaacaggaag caagggcctt cagtgtagcc
2521 cattcttgat ccagagctgt tgcctgtgac agcggtttct ctggatgtca aaggcagctg
2581 cctggtgccc agcttgcttc tcgactggtg gcccctatgg gtgggtgtgc gatggaaatg
2641 tgttcctgcc ggagtctgag gcaccagggt gtgctcaaag gctggccctg gtggtggact
2701 ggcacctgtg cagagtgccg tgtgcttgtg gtgcgccatc tgaagcaaga gtccagcgtt
2761 ctgccgtgtc tgtcccccac catgccccct acaggcggta ctgacggcgc tttttttttt
2821 tttctgtcag gaaaacaatg ttggcctgtg ggccgcccac aacatatcct tccctcacta
2881 cctgtgtgac caaggttggc ttctgttgac ctttaaaaaa gaaaccctca actcaaattg
2941 ctataattag acacttgctt ctgtcttgcc tcctgtctgc agctgtgaat agtcatttga
3001 ctgtgactgt tgcccttagc cagccagatg cgcctgtgaa ccaaagcttc gtgcacatgt
3061 gttcccctaa aggttgggga gcctcgctgt gtcttgctgt tcccaggcac caccacagca
3121 ggtgctgcca tactcttgtg gtctctgtgc gccccccccc cccccacccg tctgccaagc
3181 atgggtatga atcgtgcaca cagccatgct tcaaggccgg ggcaggggag cctgtgctga
3241 tgccatccag agcactgggc tgtgcctgga aggcgagcct tgattgtctg aacacataaa
3301 gcaaactgtc cagaaaaaaa aaaaaaaaaa a
//