LOCUS BC009304 2431 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, mRNA (cDNA
clone IMAGE:4128730), partial cds.
ACCESSION BC009304
VERSION BC009304.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2431)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2431)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: i Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19743936.
FEATURES Location/Qualifiers
source 1..2431
/db_xref="H-InvDB:HIT000034270"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4128730"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2431
/gene="DDX27"
/gene_synonym="dJ686N3.1"
/gene_synonym="DKFZp667N057"
/gene_synonym="FLJ12917"
/gene_synonym="FLJ20596"
/gene_synonym="FLJ22238"
/gene_synonym="HSPC259"
/gene_synonym="MGC1018"
/gene_synonym="PP3241"
/gene_synonym="RHLP"
/gene_synonym="Rrp3p"
/db_xref="GeneID:55661"
CDS <1..2310
/gene="DDX27"
/gene_synonym="dJ686N3.1"
/gene_synonym="DKFZp667N057"
/gene_synonym="FLJ12917"
/gene_synonym="FLJ20596"
/gene_synonym="FLJ22238"
/gene_synonym="HSPC259"
/gene_synonym="MGC1018"
/gene_synonym="PP3241"
/gene_synonym="RHLP"
/gene_synonym="Rrp3p"
/codon_start=1
/product="DDX27 protein"
/protein_id="AAH09304.2"
/db_xref="GeneID:55661"
/translation="FCDNMLADLGLIGTIGEDDEVPVEPESDSGDEEEEGPIVLGRRQ
KALGKNRSADFNPDFVFTEKEGTYDGSWALADVMSQLKKKRAATTLDEKIEKVRKKRK
TEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILTKAD
TLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQ
KACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGI
QVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFH
LSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKN
PVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAH
RMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTV
INFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQ
DVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERS
WFQTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAEERSQFEILKAQM
FAERLAKRNRRAKRARAMPEEEPVRGPAKKQKQGKKSVFDEELTNTSKKALKQYRAGP
SFEERKQLGLPHQRRGGNFKSKSRYKRRK"
misc_feature 574..1881
/gene="DDX27"
/gene_synonym="dJ686N3.1"
/gene_synonym="DKFZp667N057"
/gene_synonym="FLJ12917"
/gene_synonym="FLJ20596"
/gene_synonym="FLJ22238"
/gene_synonym="HSPC259"
/gene_synonym="MGC1018"
/gene_synonym="PP3241"
/gene_synonym="RHLP"
/gene_synonym="Rrp3p"
/note="SrmB; Region: Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and
biogenesis]"
/db_xref="CDD:COG0513"
BASE COUNT 705 a 571 c 702 g 453 t
ORIGIN
1 ttctgcgaca acatgcttgc ggacctcggc ttaatcggaa ccataggcga ggatgacgag
61 gtgccggtgg agcccgagtc tgactccggg gacgaggaag aggaggggcc cattgtgctg
121 ggcagacgac aaaaagcttt ggggaagaac cgcagtgctg atttcaaccc tgatttcgtt
181 ttcactgaga aggaggggac gtacgatggc agctgggccc tggctgatgt catgagccaa
241 ctcaagaaga agagggcagc cactacatta gatgagaaga ttgagaaagt tcgaaagaaa
301 aggaaaacag aggataaaga agccaagtct gggaagttgg aaaaggagaa agaagcaaag
361 gaaggctctg aaccaaagga gcaggaagac cttcaagaga atgatgagga aggctcagaa
421 gatgaagcct cggagactga ctactcatca gctgatgaga acatcctcac caaagcagat
481 acactcaaag taaaggatcg gaagaagaag aagaagaaag gacaggaagc aggaggattt
541 tttgaagatg catctcagta cgatgaaaac ctctcgttcc aggacatgaa cctttcccgc
601 cctcttctga aggccattac agccatgggc ttcaagcagc ccaccccgat ccagaaggcg
661 tgcatacctg tgggtctatt ggggaaggac atctgtgcct gtgcagccac tgggacaggt
721 aaaactgccg cctttgccct gcctgttttg gagcgtctga tttataaacc ccgccaggct
781 ccagtcaccc gcgtgctggt gctagtgccc acccgagagc tgggcatcca ggtgcactct
841 gtcaccagac agctggccca gttctgcaac atcaccacct gcctggctgt gggcggcttg
901 gatgtgaagt ctcaggaagc agctcttcgg gcagcgcctg acatcctcat cgccacccca
961 ggccggctca tcgatcacct ccacaactgc ccttccttcc acctgagcag catcgaggtg
1021 ctcatcctgg acgaggctga caggatgctg gatgagtact ttgaggagca gatgaaggag
1081 atcatccgaa tgtgttccca ccaccgccag accatgctct tctcggccac catgacagac
1141 gaggtgaaag atctggcttc tgtctccttg aagaatcctg tccggatatt tgtgaacagc
1201 aacacagatg tggctccctt tctgcggcag gagttcatcc ggatccggcc taatcgtgaa
1261 ggagaccggg aagccatcgt ggcagctttg ttgacgagga ccttcactga ccatgtgatg
1321 ctgttcacgc aaaccaagaa gcaggcccac cgcatgcaca tcctcctggg gctcatgggg
1381 ctgcaggtgg gtgagctcca tggcaacttg tcacagacgc agcggctgga ggccctccgg
1441 cgttttaagg atgaacagat tgacatcctc gtggccactg atgtggcagc ccgtggactt
1501 gacattgagg gggtcaaaac ggtaatcaac ttcacaatgc ctaataccat caaacattat
1561 gtccaccggg tggggcgaac agcacgtgct ggcagggctg ggcgctcagt ctctctggtg
1621 ggagaagatg agcggaagat gctgaaggag attgtaaaag ctgccaaggc ccctgtgaag
1681 gccaggatac ttccccaaga tgtcatcctc aaattccggg acaagattga gaaaatggag
1741 aaagatgtgt atgcagttct gcagctagag gcggaggaaa aagagatgca gcagtcagaa
1801 gcccagatca atacagcaaa gcggctcctg gagaagggga aggaggcagt ggtccaagag
1861 cccgagagga gctggttcca gaccaaagaa gagaggaaga aggagaaaat tgccaaagct
1921 ctgcaggaat ttgacttggc cttaagagga aagaagaaaa ggaagaagtt tatgaaggat
1981 gccaaaaaaa agggggagat gacagcagag gaaaggtctc agtttgaaat cctcaaggcg
2041 cagatgtttg ctgaacggct agcgaagagg aatcgcagag ccaagcgggc ccgagcaatg
2101 cccgaggagg agccagtgag aggtcctgcc aagaagcaaa agcaggggaa gaaatctgta
2161 tttgatgaag aactcaccaa cacaagcaag aaggccctga aacagtatcg agctggccct
2221 tcctttgaag aaaggaaaca gttgggcttg ccccaccaga gacgaggagg aaactttaaa
2281 tctaaatcca gatacaagag gaggaagtag ctgtcgtggc ctgaagaaat tcatgggggc
2341 agcccttaaa tcccttccct gtgggaagtc atcctggctg gtctgtcttt tctccatttg
2401 tttaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//