LOCUS BC009298 1345 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens hedgehog interacting protein, mRNA (cDNA clone
IMAGE:4123868), partial cds.
ACCESSION BC009298
VERSION BC009298.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1345)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1345)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009298.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: e Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1345
/db_xref="H-InvDB:HIT000087245"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4123868"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1345
/gene="HHIP"
/gene_synonym="FLJ20992"
/gene_synonym="HIP"
/db_xref="GeneID:64399"
/db_xref="MIM:606178"
CDS 478..>1345
/gene="HHIP"
/gene_synonym="FLJ20992"
/gene_synonym="HIP"
/codon_start=1
/product="HHIP protein"
/protein_id="AAH09298.1"
/db_xref="GeneID:64399"
/db_xref="MIM:606178"
/translation="MLKMLSFKLLLLAVALGFFEGDAKFGERNEGSGARRRRCLNGNP
PKRLKRRDRRMMSQLELLSGGEMLCGGFYPRLSCCLRSDSPGLGRLENKIFSVTNNTE
CGKLLEEIKCALCSPHSQSLFHSPEREVLERDLVLPLLCKDYCKEFFYTCRGHIPGFL
QTTADEFCFYYARKDGGLCFPDFPRKQVRGPASNYLDQMEEYDKVEEISRKHKHNCFC
IQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGI
KVGFLNFKKKKKK"
BASE COUNT 324 a 370 c 326 g 325 t
ORIGIN
1 ctcagcatca tctagagccc agcgctggcc ctgcctccgc ctgccccgcc gccgccgtcg
61 ccgtttctgt tcctgctact gtcccaccta aacaactccc gttacacgga caagtgaaca
121 tctgtggctg tcctctcctt ttcttcctcc tcttccaact ccttctcctc ctcccacttc
181 ccagccgcag cagaaagccc ccaacccaac tgacactggc acaactgcaa acggtgtcat
241 ccgcacaact ttatctcgct cctcgggctc ccctaaggca ttggacccat cgccgcgtct
301 tttatttttt gcaaagttgc atcgctgtac atatttttgt ccccgccacc tccctctgtc
361 tctggagtgc cctacagccc cgcaaactcc tcctggagct gcgccctagt gcccctgctg
421 ggcagtggcg ttccccccca tcctcccgcg cccagcccct gctgctctgg gcagacgatg
481 ctgaagatgc tctcctttaa gctgctgctg ctggccgtgg ctctgggctt ctttgaagga
541 gatgctaagt ttggggaaag aaacgaaggg agcggagcaa ggaggagaag gtgcctgaat
601 gggaaccccc cgaagcgcct gaaaaggaga gacaggagga tgatgtccca gctggagctg
661 ctgagtgggg gagagatgct gtgcggtggc ttctaccctc ggctgtcctg ctgcctgcgg
721 agtgacagcc cggggctagg gcgcctggag aataagatat tttctgttac caacaacaca
781 gaatgtggga agttactgga ggaaatcaaa tgtgcacttt gctctccaca ttctcaaagc
841 ctgttccact cacctgagag agaagtcttg gaaagagacc tagtacttcc tctgctctgc
901 aaagactatt gcaaagaatt cttttacact tgccgaggcc atattccagg tttccttcaa
961 acaactgcgg atgagttttg cttttactat gcaagaaaag atggtgggtt gtgctttcca
1021 gattttccaa gaaaacaagt cagaggacca gcatctaact acttggacca gatggaagaa
1081 tatgacaaag tggaagagat cagcagaaag cacaaacaca actgcttctg tattcaggag
1141 gttgtgagtg ggctgcggca gcccgttggt gccctgcata gtggggatgg ctcgcaacgt
1201 ctcttcattc tggaaaaaga aggttatgtg aagatactta cccctgaagg agaaattttc
1261 aaggagcctt atttggacat tcacaaactt gttcaaagtg gaataaaggt tggcttttta
1321 aattttaaaa aaaaaaaaaa aaaaa
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