LOCUS BC009268 3144 bp mRNA linear HUM 21-OCT-2003 DEFINITION Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:3028662), partial cds. ACCESSION BC009268 VERSION BC009268.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3144) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3144) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 22 Row: f Column: 18. FEATURES Location/Qualifiers source 1..3144 /db_xref="H-InvDB:HIT000087238" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3028662" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..3144 /gene="SBF1" /gene_synonym="MTMR5" /db_xref="GeneID:6305" /db_xref="MIM:603560" CDS <1..2794 /gene="SBF1" /gene_synonym="MTMR5" /codon_start=2 /product="SBF1 protein" /protein_id="AAH09268.2" /db_xref="GeneID:6305" /db_xref="MIM:603560" /translation="FTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQTPVDQLLQDGL QLRSCTFQLLKMAFDEEVGSDSAELFRKQLHKLRYPPDIRATFAFTLGSAHTPGRPPR VTKDKGPSLRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPPPEDQEDEISVSE ELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPV NRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLH GKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAH MGSHGKWGSVRTSGRSSGLGTDVGSRLAGRDALAPPQANGGPPDPGFLRPQRAALYIL GDKAQLKGVRSDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPAAEPSPASFLRS LEDSEWLIQIHKLLQVSVLVVELLDSGSSVLVGLEDGWDITTQVVSLVQLLSDPFYRT LEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVHQVHLQFPMEFEF SQFYLKFLGYHHVSRRFRTFLLDSDYERIELGLLYEEKGERRGQVPCRSVWEYVDRLS KRTPVFHNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPE EERSDGGAPQSRRRVVWPCYDSCPRAQPDAISRLLEELQRLETELGQPAERWKDTWDR VKAAQRLEGRPDGRGTPSSLLVSTAPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGST TSGSRQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLR YYDHRVDTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVP SAQQWVDRIQSCLSDA" misc_feature 2480..2791 /gene="SBF1" /gene_synonym="MTMR5" /note="PH; Region: Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids" /db_xref="CDD:smart00233" BASE COUNT 582 a 1041 c 980 g 541 t ORIGIN 1 cttcacgggg atgcccacgg accccctggt tggggagcag gtggtggtcc gctccttccc 61 ggtggctgcg ctgaccaagg agaagcgcat cagcgtccag acccctgtgg accagctcct 121 gcaggacggg ctccagctgc gctcctgcac attccagctg ctgaaaatgg cctttgacga 181 ggaggtgggg tctgacagcg ccgagctctt ccgtaagcag ctgcataagc tgcggtaccc 241 gccggacatc agggccacct ttgcgttcac cttgggctct gcccacacac ctggccggcc 301 accgcgagtc accaaggaca agggtccttc cctcagaacc ctgtcccgga acctggtcaa 361 gaacgccaag aagaccatcg ggcggcagca tgtcactcgc aagaagtaca acccccccag 421 ctgggagcac cggggccagc cgccccctga ggaccaggag gacgagatct cagtgtcgga 481 ggagctggag cccagcacgc tgaccccgtc ctcagccctg aagccctccg accgcatgac 541 catgagcagc ctggtggaaa gggcttgctg tcgcgactac cagcgcctcg gtctgggcac 601 cctgagcagc agcctgagcc gggccaagtc tgagcccttc cgcatttctc cggtcaaccg 661 catgtatgcc atctgccgca gctacccagg gctgctgatc gtgccccaga gtgtccagga 721 caacgccctg cagcgcgtgt cccgctgcta ccgccagaac cgcttccccg tggtctgctg 781 gcgcagcggg cggtccaagg cggtgctgct gcgctctgga ggcctgcatg gcaaaggtgt 841 cgtcggcctc ttcaaggccc agaacgcacc ttctccaggc cagtcccagg cggactcgag 901 tagcctggag caggagaagt acctgcaggc tgtggtcagc tccatgcccc gctacgccga 961 cgcgtcggga cgcaacacgc ttagcggctt ctcctcagcc cacatgggca gtcacggtaa 1021 gtggggcagt gtccggacca gtggacgcag cagtggcctt ggcaccgatg tgggctcccg 1081 gctagctggc agagacgcgc tggccccacc ccaggccaac gggggccctc ccgacccggg 1141 cttcctgcgt ccgcagcgag cagccctcta tatccttggg gacaaagccc agctcaaggg 1201 tgtgcggtca gaccccctgc agcagtggga gctggtgccc attgaggtat tcgaggcacg 1261 gcaggtgaag gctagcttca agaagctgct gaaagcatgt gtcccaggct gccccgctgc 1321 tgagcccagc ccagcctcct tcctgcgctc actggaggac tcagagtggc tgatccagat 1381 ccacaagctg ctgcaggtgt ctgtgctggt ggtggagctc ctggattcag gctcctccgt 1441 gctggtgggc ctggaggatg gctgggacat caccacccag gtggtatcct tggtgcagct 1501 gctctcagac cccttctacc gcacgctgga gggctttcgc ctgctggtgg agaaggagtg 1561 gctgtccttc ggccatcgct tcagccaccg tggagctcac accctggccg ggcagagcag 1621 cggcttcaca cccgtcttcc tgcagttcct ggactgcgta caccaggtcc acctgcagtt 1681 ccccatggag tttgagttca gccagttcta cctcaagttc ctcggctacc accatgtgtc 1741 ccgccgtttc cggaccttcc tgctcgactc tgactatgag cgcattgagc tggggctgct 1801 gtatgaggag aagggggaac gcaggggcca ggtgccgtgc aggtctgtgt gggagtatgt 1861 ggaccggctg agcaagagga cgcctgtgtt ccacaattac atgtatgcgc ccgaggacgc 1921 agaggtcctg cggccctaca gcaacgtgtc caacctgaag gtgtgggact tctacactga 1981 ggagacgctg gccgagggcc ctccctatga ctgggaactg gcccaggggc cccctgaacc 2041 cccagaggaa gaacggtctg atggaggcgc tccccagagc aggcgccgcg tggtgtggcc 2101 ctgttacgac agctgcccgc gggcccagcc tgacgccatc tcacgcctgc tggaggagct 2161 gcagaggctg gagacagagt tgggccaacc cgctgagcgc tggaaggaca cctgggaccg 2221 ggtgaaggct gcacagcgcc tcgagggccg gccagacggc cgtggcaccc ctagctccct 2281 ccttgtgtcc accgcacccc accaccgtcg ctcgctgggt gtgtacctgc aggaggggcc 2341 cgtgggctcc accctgagcc tcagcctgga cagcgaccag agtagtggct caaccacatc 2401 cggctcccgt caggctgccc gccgcagcac cagcaccctg tacagccagt tccagacagc 2461 agagagtgag aacaggtcct acgagggcac tctgtacaag aagggggcct tcatgaagcc 2521 ttggaaggcc cgctggttcg tgctggacaa gaccaagcac cagctgcgct actacgacca 2581 ccgtgtggac acagagtgca agggtgtcat cgacttggcg gaggtggagg ctgtggcacc 2641 tggcacgccc actatgggtg cccctaagac tgtggacgag aaggccttct ttgacgtgaa 2701 gacaacgcgt cgcgtttaca acttctgtgc ccaggacgtg ccctcggccc agcagtgggt 2761 ggaccggatc cagagctgcc tgtcggacgc ctgagcctcc cagccctgcc cggctgctct 2821 gcttccggtc gttaccgacc actaggggtg ggcagggccg ccccggccat gtttacagcc 2881 ccggccctcg acagtattga ggccccgagc ccccagcact tgtgtgtaca gcccccgtcc 2941 ccgccccgcc ccgcccggcc ggccctaact tattttggcg tcacagctga gcaccgtgcc 3001 gggaggtggc caaggtacag cccgcaatgg gcctgtaaat agtccggccc cgtcagcgtg 3061 tgctggtcca gccagcggct gcaggcgagt ttctagaacc agagtctata taaagagaga 3121 actaacaaaa aaaaaaaaaa aaaa //