LOCUS BC009117 3275 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens brevican, mRNA (cDNA clone MGC:18150 IMAGE:4154474), complete cds. ACCESSION BC009117 VERSION BC009117.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3275) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3275) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-JUN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 19 Row: n Column: 16. FEATURES Location/Qualifiers source 1..3275 /db_xref="H-InvDB:HIT000034178" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:18150 IMAGE:4154474" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3275 /gene="BCAN" /gene_synonym="BEHAB" /gene_synonym="CSPG7" /gene_synonym="MGC13038" /db_xref="GeneID:63827" /db_xref="HGNC:HGNC:23059" /db_xref="MIM:600347" CDS 125..2860 /gene="BCAN" /gene_synonym="BEHAB" /gene_synonym="CSPG7" /gene_synonym="MGC13038" /codon_start=1 /product="brevican" /protein_id="AAH09117.1" /db_xref="GeneID:63827" /db_xref="HGNC:HGNC:23059" /db_xref="MIM:600347" /translation="MAQLFLPLLAALVLAQAPAALADVLEGDSSEDRAFRVRIAGDAP LQGVLGGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRGREAEVLVARGVRVKVNE AYRFRVALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFL YREGSARYAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQ TPREACYGDMDGFPGVRNYGVVDPDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAY CQERGAEIATTGQLYAAWDGGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFL FPNQTGFPNKHSRFNVYCFRDSAQPSAIPEASNPASNPASDGLEAIVTVTETLEELQL PQEATESESRGAIYSIPIMEDGGGGSSTPEDPAEAPRTLLEFETQSMVPPTGFSEEEG KALEEEEKYEDEEEKEEEEEEEEVEDEALWAWPSELSSPGPEASLPTEPAAQEKSLSQ APARAVLQPGASPLPDGESEASRPPRVHGPPTETLPTPRERNLASPSPSTLVEAREVG EATGGPELSGVPRGESEETGSSEGAPSLLPATRAPEGTRELEAPSEDNSGRTAPAGTS VQAQPVLPTDSASRGGVAVVPASGDCVPSPCHNGGTCLEEEEGVRCLCLPGYGGDLCD VGLRFCNPGWDAFQGACYKHFSTRRSWEEAETQCRMYGAHLASISTPEEQDFINNRYR EYQWIGLNDRTIEGDFLWSDGVPLLYENWNPGQPDSYFLSGENCVVMVWHDQGQWSDV PCNYHLSYTCKMGLVSCGPPPELPLAQVFGRPRLRYEVDTVLRYRCREGLAQRNLPLI RCQENGRWEAPQISCVPRRPARALHPEEDPEGRQGRLLGRWKALLIPPSSPMPGP" BASE COUNT 674 a 1016 c 1005 g 580 t ORIGIN 1 gcagtctccg ccgcagtctc agctgcagct gcaggactga gccgtgcacc cggaggagac 61 ccccggagga ggcgacaaac ttcgcagtgc cgcgacccaa ccccagccct gggtagcctg 121 cagcatggcc cagctgttcc tgcccctgct ggcagccctg gtcctggccc aggctcctgc 181 agctttagca gatgttctgg aaggagacag ctcagaggac cgcgcttttc gcgtgcgcat 241 cgcgggcgac gcgccactgc agggcgtgct cggcggcgcc ctcaccatcc cttgccacgt 301 ccactacctg cggccaccgc cgagccgccg ggctgtgctg ggctctccgc gggtcaagtg 361 gactttcctg tcccggggcc gggaggcaga ggtgctggtg gcgcggggag tgcgcgtcaa 421 ggtgaacgag gcctaccggt tccgcgtggc actgcctgcg tacccagcgt cgctcaccga 481 cgtctccctg gcgctgagcg agctgcgccc caacgactcg ggtatctatc gctgtgaggt 541 ccagcacggc atcgatgaca gcagcgacgc tgtggaggtc aaggtcaaag gggtcgtctt 601 tctctaccga gagggctctg cccgctatgc tttctccttt tctggggccc aggaggcctg 661 tgcccgcatt ggagcccaca tcgccacccc ggagcagctc tatgccgcct accttggggg 721 ctatgagcaa tgtgatgctg gctggctgtc ggatcagacc gtgaggtatc ccatccagac 781 cccacgagag gcctgttacg gagacatgga tggcttcccc ggggtccgga actatggtgt 841 ggtggacccg gatgacctct atgatgtgta ctgttatgct gaagacctaa atggagaact 901 gttcctgggt gaccctccag agaagctgac attggaggaa gcacgggcgt actgccagga 961 gcggggtgca gagattgcca ccacgggcca actgtatgca gcctgggatg gtggcctgga 1021 ccactgcagc ccagggtggc tagctgatgg cagtgtgcgc taccccatcg tcacacccag 1081 ccagcgctgt ggtgggggct tgcctggtgt caagactctc ttcctcttcc ccaaccagac 1141 tggcttcccc aataagcaca gccgcttcaa cgtctactgc ttccgagact cggcccagcc 1201 ttctgccatc cctgaggcct ccaacccagc ctccaaccca gcctctgatg gactagaggc 1261 tatcgtcaca gtgacagaga ccctggagga actgcagctg cctcaggaag ccacagagag 1321 tgaatcccgt ggggccatct actccatccc catcatggag gacggaggag gtggaagctc 1381 cactccagaa gacccagcag aggcccctag gacgctccta gaatttgaaa cacaatccat 1441 ggtaccgccc acggggttct cagaagagga aggtaaggca ttggaggaag aagagaaata 1501 tgaagatgaa gaagagaaag aggaggaaga agaagaggag gaggtggagg atgaggctct 1561 gtgggcatgg cccagcgagc tcagcagccc gggccctgag gcctctctcc ccactgagcc 1621 agcagcccag gagaagtcac tctcccaggc gccagcaagg gcagtcctgc agcctggtgc 1681 atcaccactt cctgatggag agtcagaagc ttccaggcct ccaagggtcc atggaccacc 1741 tactgagact ctgcccactc ccagggagag gaacctagca tccccatcac cttccactct 1801 ggttgaggca agagaggtgg gggaggcaac tggtggtcct gagctatctg gggtccctcg 1861 aggagagagc gaggagacag gaagctccga gggtgcccct tccctgcttc cagccacacg 1921 ggcccctgag ggtaccaggg agctggaggc cccctctgaa gataattctg gaagaactgc 1981 cccagcaggg acctcagtgc aggcccagcc agtgctgccc actgacagcg ccagccgagg 2041 tggagtggcc gtggtccccg catcaggtga ctgtgtcccc agcccctgcc acaatggtgg 2101 gacatgcttg gaggaggagg aaggggtccg ctgcctatgt ctgcctggct atggggggga 2161 cctgtgcgat gttggcctcc gcttctgcaa ccccggctgg gacgccttcc agggcgcctg 2221 ctacaagcac ttttccacac gaaggagctg ggaggaggca gagacccagt gccggatgta 2281 cggcgcgcat ctggccagca tcagcacacc cgaggaacag gacttcatca acaaccggta 2341 ccgggagtac cagtggatcg gactcaacga caggaccatc gaaggcgact tcttgtggtc 2401 ggatggcgtc cccctgctct atgagaactg gaaccctggg cagcctgaca gctacttcct 2461 gtctggagag aactgcgtgg tcatggtgtg gcatgatcag ggacaatgga gtgacgtgcc 2521 ctgcaactac cacctgtcct acacctgcaa gatggggctg gtgtcctgtg ggccgccacc 2581 ggagctgccc ctggctcaag tgttcggccg cccacggctg cgctatgagg tggacactgt 2641 gcttcgctac cggtgccggg aaggactggc ccagcgcaat ctgccgctga tccgatgcca 2701 agagaacggt cgttgggagg ccccccagat ctcctgtgtg cccagaagac ctgcccgagc 2761 tctgcaccca gaggaggacc cagaaggacg tcaggggagg ctactgggac gctggaaggc 2821 gctgttgatc cccccttcca gccccatgcc aggtccctag ggggcaaggc cttgaacact 2881 gccggccaca gcactgccct gtcacccaaa ttttccctca caccctgcgc tcccgccacc 2941 acaggaagtg acaacatgac gaggggtggt gctggagtcc aggtgacagt tcctgaaggg 3001 gcttctggga aatacctagg aggctccagc ccagcccagg ccctctcccc ctaccctggg 3061 caccagatct tccatcaggg ccggagtaaa tccctaagtg cctcaactgc cctctccctg 3121 gcagccatct tgtcccctct attcctctag ggagcactgt gcccactctt tctgggtttt 3181 ccaagggaat gggcttgcag gatggagtgt ctgtaaaatc aacaggaaat aaaactgtgt 3241 atgagcccag gcaaaaaaaa aaaaaaaaaa aaaaa //