LOCUS BC009067 1762 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 2, mRNA (cDNA clone
IMAGE:3854442), partial cds.
ACCESSION BC009067
VERSION BC009067.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1762)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1762)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: b Column: 2.
FEATURES Location/Qualifiers
source 1..1762
/db_xref="H-InvDB:HIT000087206"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3854442"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1762
/gene="SMARCC2"
/gene_synonym="BAF170"
/gene_synonym="CRACC2"
/gene_synonym="Rsc8"
/db_xref="GeneID:6601"
/db_xref="MIM:601734"
CDS <1..1399
/gene="SMARCC2"
/gene_synonym="BAF170"
/gene_synonym="CRACC2"
/gene_synonym="Rsc8"
/codon_start=2
/product="SMARCC2 protein"
/protein_id="AAH09067.1"
/db_xref="GeneID:6601"
/db_xref="MIM:601734"
/translation="RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEA
PKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVER
DIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEEL
ETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPP
GSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQ
QPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPF
GMPPPPPPPAPSIIPFGSLADSISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMAN
PLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDP
TAPSPGTVTPVPPPQ"
BASE COUNT 427 a 551 c 482 g 302 t
ORIGIN
1 gcggattgag gagagcggga atgacgaggc tcgggtggaa ggccaggcca cagatgagaa
61 gaaggagccc aaggaacccc gagaaggagg gggtgctata gaggaggaag caaaagagaa
121 aaccagcgag gctcccaaga aggatgagga gaaagggaaa gaaggcgaca gtgagaagga
181 gtccgagaag agtgatggag acccaatagt cgatcctgag aaggagaagg agccaaagga
241 agggcaggag gaagtgctga aggaagtggt ggagtctgag ggggaaagga agacaaaggt
301 ggagcgggac attggcgagg gcaacctctc caccgctgct gccgccgccc tggccgccgc
361 cgcagtgaaa gctaagcact tggctgctgt tgaggaaagg aagatcaaat ctttggtggc
421 cctgctggtg gagacccaga tgaaaaagtt ggagatcaaa cttcggcact ttgaggagct
481 ggagactatc atggaccggg agcgagaagc actggagtat cagaggcagc agctcctggc
541 cgacagacaa gccttccaca tggagcagct gaagtatgcg gagatgaggg ctcggcagca
601 gcacttccaa cagatgcacc aacagcagca gcagccacca ccagccctgc ccccaggctc
661 ccagcctatc cccccaacag gggctgctgg gccacccgca gtccatggct tggctgtggc
721 tccagcctct gtagtccctg ctcctgctgg cagtggggcc cctccaggaa gtttgggccc
781 ttctgaacag attgggcagg cagggtcaac tgcagggcca cagcagcagc aaccagctgg
841 agccccccag cctggggcag tcccaccagg ggttcccccc cctggacccc atggcccctc
901 accgttcccc aaccaacaaa ctcctccctc aatgatgcca ggggcagtgc caggcagcgg
961 gcacccaggc gtggcgggta atgctccttt gggtttgcct tttggcatgc cgcctcctcc
1021 tcctcctcct gctccatcca tcatcccatt tggtagtcta gctgactcca tcagtattaa
1081 cctccccgct cctcctaacc tgcatgggca tcaccaccat ctcccgttcg ccccgggcac
1141 tctcccccca cctaacctgc ctgtgtccat ggcgaaccct ctacatccta acctgccggc
1201 gaccaccacc atgccatctt ccttgcctct cgggccgggg ctcggatccg ccgcagccca
1261 aagccctgcc attgtggcag ctgttcaggg caacctcctg cccagtgcca gcccactgcc
1321 agacccaggc acccccctgc ctccagaccc cacagccccg agcccaggca cggtcacccc
1381 tgtgccacct ccacagtgag gagccagcca gacatctctc cccctcaccc cctgtggaca
1441 tcacggttcc aggaacagcc cttcccccac cactgggacc ctccccagcc tggagagttc
1501 atcactacgt aaggaaagct ccttccgccc ctccaaagcc ctcaccatgc ctaacagagg
1561 catgcatttt tatatcagat tattcaagga cttctgttta aaagatgttt ataatgtctg
1621 ggagagagga taggatggga atgctgccct aaaggaaggg ctggtgaaag gtgtttatac
1681 aaggttctat taaccacttc taagggtaca cctccctcca aactactgca ttttctatgg
1741 attaaaaaaa aaaaaaaaaa aa
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