LOCUS BC009025 1237 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens chromosome 17 open reading frame 42, mRNA (cDNA clone
IMAGE:4184795), partial cds.
ACCESSION BC009025
VERSION BC009025.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1237)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1237)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC009025.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: l Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375953.
FEATURES Location/Qualifiers
source 1..1237
/db_xref="H-InvDB:HIT000034144"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4184795"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1237
/gene="C17orf42"
/gene_synonym="FLJ22729"
/db_xref="GeneID:79736"
CDS <1..1053
/gene="C17orf42"
/gene_synonym="FLJ22729"
/codon_start=1
/product="C17orf42 protein"
/protein_id="AAH09025.2"
/db_xref="GeneID:79736"
/translation="ERWRCFLTPSRSSLYWALHNFCCRKKSTTPKKITPNVTFCDENA
KEPENALDKLFSSEQQASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNL
ESLMNVPLFKYKSTVQVCNSILCPKTGREKRKSPENRFLRKLLKPDIERERLKAVNSI
ISIVFGTRRIAWAHLDRKLTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADF
YVLKKTGLSIQNSSLFPILLHFHIMEAMLYALLNKTFAQDGQHQVLSMNRNAVGKHFE
LMIGDSRTSGKELVKQFLFDSILKADPRVFFPSDKIVHYRQMFLSTELQRVEELYDSL
LQAIAFYELAVFDSQP"
BASE COUNT 398 a 232 c 247 g 360 t
ORIGIN
1 gagaggtgga gatgctttct gaccccgtcg aggtcatccc tgtactgggc cttacataat
61 ttctgctgtc ggaaaaaatc cactacacct aagaaaatta ctcccaatgt tactttttgt
121 gatgaaaatg caaaggagcc cgaaaatgca cttgacaagc tcttctcttc agaacagcag
181 gcttccatct tgcatgtgtt gaatacagca tctactaaag aacttgaagc tttccgattg
241 cttcgtggaa gaaggtccat caatatcgta gagcacagag aaaactttgg gccatttcag
301 aatttagaga gtttaatgaa tgtgcccttg tttaagtata aaagtacagt tcaagtttgt
361 aactccatac tttgtccaaa gactggacgg gaaaaaagaa agtcaccgga aaaccggttc
421 ctgagaaagc tcctcaaacc agacatagaa agagaaagac ttaaggcagt taatagtatc
481 atatctatcg tttttggtac tcgaagaatt gcctgggctc accttgatcg taagttgaca
541 gtgctggact ggcagcaaag tgaccgttgg agtttaatga gaggaatata ctcatcatca
601 gtctatttag aagagatttc ctcgatcatt tcaaagatgc ctaaagcaga tttctatgtt
661 ctgaaaaaaa caggactttc cattcagaac tcatctctgt ttccaatact gttacatttt
721 catatcatgg aagccatgct gtatgcctta ttaaataaaa cttttgccca ggatgggcag
781 catcaggtgc tgagcatgaa tcgaaatgca gtggggaagc attttgaact gatgattggt
841 gactcccgga ctagtggaaa agagctagtg aagcagtttc tcttcgattc tatactgaag
901 gcggatcctc gggtgttctt cccatcagat aaaatagttc actacagaca gatgttttta
961 tctactgaac tacaaagagt agaagagctt tatgattcat tattacaagc tattgccttc
1021 tatgaattag cagtgtttga ctctcagcct tagaattctg aggttaacgt gctaaagtat
1081 aattattagc tctaacgtaa caccaactgt tgtgaacatc catgttattg gaaaagaaca
1141 cattttcagt gtattttaga tgtttaaatt ctgacttttg gctattaaat ggtttacaca
1201 ataagccaag accaaatcaa aaaaaaaaaa aaaaaaa
//