LOCUS BC008958 1183 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
retention receptor 1, mRNA (cDNA clone MGC:4023 IMAGE:3009767),
complete cds.
ACCESSION BC008958
VERSION BC008958.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1183)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1183)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008958.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: m Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5803047.
FEATURES Location/Qualifiers
source 1..1183
/db_xref="H-InvDB:HIT000034107"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4023 IMAGE:3009767"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1183
/gene="KDELR1"
/gene_synonym="ERD2"
/gene_synonym="ERD2.1"
/gene_synonym="HDEL"
/gene_synonym="PM23"
/db_xref="GeneID:10945"
/db_xref="MIM:131235"
CDS 184..756
/gene="KDELR1"
/gene_synonym="ERD2"
/gene_synonym="ERD2.1"
/gene_synonym="HDEL"
/gene_synonym="PM23"
/codon_start=1
/product="KDELR1 protein"
/protein_id="AAH08958.1"
/db_xref="GeneID:10945"
/db_xref="MIM:131235"
/translation="MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVF
TARYLDLFTNYISLYNTCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPT
AILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFVVFCLLD
KKKKSFHSLVFDSDDSFFFYSVAPIFIKCF"
misc_feature 184..642
/gene="KDELR1"
/gene_synonym="ERD2"
/gene_synonym="ERD2.1"
/gene_synonym="HDEL"
/gene_synonym="PM23"
/note="ER_lumen_recept; Region: ER lumen protein retaining
receptor"
/db_xref="CDD:pfam00810"
BASE COUNT 247 a 370 c 258 g 308 t
ORIGIN
1 ccagctccgc cgccagctcc agcctttgct ccccctccca aagtcccctc cccggagcgg
61 agcgcaccta gggtccctct tccgtccccc cagcccagct acccgttcag accagcagcc
121 tcggggggca cccccccgcc agcctgcctc cctcccgctc agccctgcca gggttcccca
181 gccatgaatc tcttccgatt cctgggagac ctctcccacc tcctcgccat catcttgcta
241 ctgctcaaaa tctggaagtc ccgctcgtgc gccggaattt cagggaagag ccaggtcctg
301 tttgctgtgg tgttcactgc ccgatatctg gacctcttca ccaactacat ctcactctac
361 aacacgtgta tgaaggtggt ctacatagcc tgctccttca ccacggtctg gttgatttat
421 agcaagttca aagctactta cgatgggaac catgacacgt tcagagtgga gttcctggtc
481 gttcccacag ccattctggc gttcctggtc aatcatgact tcacccctct ggagatcctc
541 tggaccttct ccatctacct ggagtcagtg gccatcttgc cgcagctgtt catggtgagc
601 aagaccggcg aggcggagac catcaccagc cactacttgt ttgtagtttt ttgcctttta
661 gacaagaaaa aaaaatcttt ccactcttta gtttttgatt ctgatgactc gtttttcttc
721 tactctgtgg ccccaatttt tataaagtgt ttttgagtgt cctatgggcc ggggcagggt
781 ccaagatctt ttcccttccc caggcccctc ggctccctcc cagatcccac ccccagcccc
841 actggttgcc aaacactaaa tctgccgaca cccatctgcc ccacctcctg ccatggccat
901 gaaccgcgac ccccactaaa tttctagatt ggggataggg agaaagggag gcccaggaag
961 gtctcccctg attttttttc atagtaattt ttttccccag agtttgaatt ttttggtctt
1021 ctcctggttt tttggcaaat taggggggcc cggggctcaa gtgcgggaag ggggctggcc
1081 cgaggatccc atggctctca caccatgttt ttgtacagaa ctgatggttg aatctttgtt
1141 ctcttgaaat aaacagaaga aaatgaaaaa aaaaaaaaaa aaa
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