LOCUS BC008931 1329 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens SET domain and mariner transposase fusion gene, mRNA
(cDNA clone IMAGE:2819917), partial cds.
ACCESSION BC008931
VERSION BC008931.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1329)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1329)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008931.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: k Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5730038.
FEATURES Location/Qualifiers
source 1..1329
/db_xref="H-InvDB:HIT000034086"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2819917"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1329
/gene="SETMAR"
/db_xref="GeneID:6419"
CDS <1..1292
/gene="SETMAR"
/codon_start=3
/product="SETMAR protein"
/protein_id="AAH08931.2"
/db_xref="GeneID:6419"
/translation="QRRHGLVGWRSLRRSLRPRLSSWMSRAARKTCRWARGPRGPRRR
PSSSLYCPVEKSNISCGNEKEPSMCGSAPSVFPSCKRLTLETMKMMLDKKQIRAIFLF
EFKMGRKAAETTRNINNAFGPGTANERTVQWWFKKFCKGDESLEDEERSGRPSEVDND
QLRAIIEADPLTTTREVAEELNVNHSTVVRHLKQIGKVKKLDKWVPHELTENQKNRRF
EVSSSLILRNHNEPFLDRIVTCDEKWILYDNRRRSAQWLDQEEAPKHFPKPILHPKKV
MVTIWWSAAGLIHYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDN
ARPHVAQPTLQKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAEN
AFQEFVESQSTDFYATGINQLISRWQKCVDCNGSYFD"
misc_feature 738..980
/gene="SETMAR"
/note="Transposase_1; Region: Transposase. This family
includes the mariner transposase"
/db_xref="CDD:pfam01359"
BASE COUNT 401 a 311 c 309 g 308 t
ORIGIN
1 ggcaaagacg acacggcctt gtgggatggc ggagtttaag gagaagcctg aggccccgac
61 tgagcagctg gatgtcgcgt gcggccagga aaacttgccg gtgggcgcgt ggcccccggg
121 ggccgcgccg gcgcccttcc agttctctgt actgccccgt agaaaagtcg aacatcagtt
181 gtggaaatga gaaggaaccc agcatgtgtg gctcagcccc ttctgtgttc ccctcctgca
241 agcgattgac ccttgagact atgaaaatga tgttagacaa aaagcaaatt cgagcaattt
301 tcttattcga gttcaaaatg ggtcgtaaag cagcagaaac aactcgcaac atcaacaatg
361 catttggccc aggaactgct aacgaacgta cagtgcagtg gtggttcaag aagttttgca
421 aaggagatga gagccttgaa gatgaggagc gtagtggccg gccatcagaa gttgacaacg
481 accagttgag agcaatcatc gaagctgatc cccttacaac tacacgagaa gttgctgaag
541 aactcaatgt caaccattct acggtcgttc gacatttgaa gcaaattgga aaggtgaaaa
601 agctcgataa gtgggtgcct catgagctga ctgaaaatca aaaaaatcgt cgttttgaag
661 tgtcatcttc tcttattcta cgcaaccaca acgaaccatt tctcgatcgg attgtgacgt
721 gtgatgaaaa gtggatttta tatgacaacc ggcgacgatc agctcagtgg ttggatcaag
781 aagaagctcc aaagcacttc ccaaagccaa tcttgcaccc aaaaaaggtc atggtcacta
841 tttggtggtc tgctgctggt ctgatccact acagctttct gaatcccggt gaaaccatta
901 catctgagaa gtatgctcag gaaatcgatg agatgaacca aaaactgcaa cgcctgcagc
961 tggcattggt caacagaaag ggcccaattc ttctccacga caatgcccga ccgcatgttg
1021 cacaacccac acttcaaaag ttgaatgaat tgggctatga agttttgcct catccaccgt
1081 attcacctga cctcttgcca accaactacc acgtctttaa gcatctcaac aactttttgc
1141 agggaaaacg cttccacaac cagcaggatg cagaaaatgc tttccaagag ttcgtcgaat
1201 cccaaagcac ggatttttac gctacaggaa taaaccaact tatttctcgt tggcaaaaat
1261 gtgttgattg taatggttcc tattttgatt aataaaaatg cgttgagcct aaaaaaaaaa
1321 aaaaaaaaa
//