LOCUS BC008917 1933 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stromal cell derived factor 4, mRNA (cDNA clone
MGC:16111 IMAGE:3622725), complete cds.
ACCESSION BC008917
VERSION BC008917.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1933)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1933)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008917.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1933
/db_xref="H-InvDB:HIT000034077"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16111 IMAGE:3622725"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1933
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
CDS 230..1318
/gene="SDF4"
/gene_synonym="Cab45"
/gene_synonym="RP5-902P8.6"
/codon_start=1
/product="stromal cell derived factor 4"
/protein_id="AAH08917.1"
/db_xref="GeneID:51150"
/db_xref="HGNC:HGNC:24188"
/translation="MVWPWVAMASRWGPLIGLAPCCLWLLGAVLLMDASARPANHSST
RERVANREENEILPPDHLNGVKLEMDGHLNRGFHQEVFLGKDLGGFDEDAEPRRSRRK
LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWD
EYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTE
EEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDD
NWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNALNEAKQMIAVADENQNHHL
EPEEVLKYSEFFTGSKLVDYARSVHEEF"
BASE COUNT 398 a 600 c 608 g 327 t
ORIGIN
1 cctgatccgg gcccgttggc ggcgtcactg acgcttcgct ccggtcctcg gatcccgagc
61 gcggggaggc agaccgactg tgagctgctt gtccccatcc tgcggccgtc ctggggacac
121 agagccctcc gtggtgcccg gggattggat tggagccagg acctcacttc ctcctctgcc
181 cctgcccctg cccctcccag cacctggccc acaccctgca gcccgcccca tggtctggcc
241 ctgggtggcg atggcgtcca ggtggggtcc cctcattggc ctggctccgt gctgcctctg
301 gctcctgggg gcagtccttc tgatggacgc gtctgcacgg cctgccaacc actcgtccac
361 tcgagagaga gtagccaaca gggaggagaa tgagatcctg cccccagacc acctgaacgg
421 ggtgaagctg gagatggacg ggcacctcaa tcgcggcttc caccaggagg tcttcctagg
481 caaggacctg ggtggctttg atgaggacgc ggagccgcgg cggagccgga ggaagctgat
541 ggtcatcttt tccaaggtgg atgtgaacac tgaccggaag atcagtgcca aggagatgca
601 gcgctggatc atggagaaga cggccgagca cttccaggag gccatggagg agagcaagac
661 acacttccgc gccgtggacc ctgacgggga cggtcacgtg tcttgggacg agtataaggt
721 gaagtttttg gcgagtaaag gccatagcga gaaggaggtt gccgacgcca tcaggctcaa
781 cgaggaactc aaagtggacg aggaaacaca ggaagtcctg gagaacctga aggaccgctg
841 gtaccaggcg gacagccccc ctgcagacct gctgctgacg gaggaggagt tcctgtcgtt
901 cctccacccc gagcacagcc ggggaatgct caggttcatg gtgaaggaga tcgtccggga
961 cctggaccag gacggtgaca agcagctctc tgtgcccgag ttcatctccc tgcccgtggg
1021 caccgtggag aaccagcagg gccaggacat tgacgacaac tgggtgaaag acagaaaaaa
1081 ggagtttgag gagctcattg actccaacca cgacggcatc gtgaccgccg aggagctgga
1141 gagctacatg gaccccatga acgagtacaa cgcgctgaac gaggccaagc agatgatcgc
1201 cgtcgccgac gagaaccaga accaccacct ggagcccgag gaggtgctca agtacagcga
1261 gttcttcacg ggcagcaagc tggtggacta cgcgcgcagc gtgcacgagg agttttgagc
1321 gcccggccgc gccccgcgcc gccccccacg caccaccggg gcggcctcgc gggtgactcc
1381 gggctccgtg gctgtcccgg accccacctc ttccctgccg cccgccaccg gccgaccgac
1441 cgcggctgcc ccagttgatg agcggcgtgt cccctctgca gcgcgcaccc cggcggggct
1501 ttggctgtga cgcggtcggg gcgcggggct gggctgtggc cccgcggcgc cgcctcctcc
1561 ctggtccctc gaaatcgtgg catctcactt ctgagaacga aatctcgctt cagtcactct
1621 gccgaaggcg ctgacggcat cgcggccgga acctctgggc ccggcccctc ccagggccgc
1681 cgctccgtgg gaaaaaacag ctcctccatt tccttgaaaa ctgaacgatt attaaaaata
1741 gattaaactt cgctggaaat gagtagccag gaagttcagg ggagggtgcc gggtccttcc
1801 cgggcctggc gtgtcggagc cacccaggtc ccgcagctgc cgctgagaaa atgcaaatat
1861 ttgttgtgac aagaatcaca tacatttact ttaaatatag ttgccttttt tggtcaaaaa
1921 aaaaaaaaaa aaa
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