LOCUS BC008909 2564 bp mRNA linear HUM 09-DEC-2003 DEFINITION Homo sapiens pleckstrin homology domain interacting protein, mRNA (cDNA clone IMAGE:3830844), partial cds. ACCESSION BC008909 VERSION BC008909.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2564) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2564) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 9, 2003 this sequence version replaced BC008909.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 24 Row: p Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 20149647. FEATURES Location/Qualifiers source 1..2564 /db_xref="H-InvDB:HIT000034070" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3830844" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2564 /gene="PHIP" /gene_synonym="FLJ20705" /gene_synonym="ndrp" /gene_synonym="WDR11" /db_xref="GeneID:55023" CDS <1..2420 /gene="PHIP" /gene_synonym="FLJ20705" /gene_synonym="ndrp" /gene_synonym="WDR11" /codon_start=3 /product="PHIP protein" /protein_id="AAH08909.2" /db_xref="GeneID:55023" /translation="TLCCLKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDD AKYRRWNIGDRFRSVIDDAWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPW DMELIPNNAVFPEELGTSVPLTDGECRSLIYKPLDGEWGTNPRDEECERIVAGINQLM TLDIASAFVAPVDLQAYPMYCTVVAYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHN TRTFNEPGSPIVKSAKFVTDLLLHFIKDQTCYNIIPLYNSMKKKVLSDSEDEEKDADV PGTSTRKRKDHQPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEY PDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSL RLSAFFEEHISSVLSDYKSALRFHKRNTITKRRKKRNRSSSVSSSAASSPERKKRILK PQLKSESSTSAFSTPTRSIPPRHNAAQINGKTESSSVVRTRSNRVVVDPVVTEQPSTS SAAKTFITKANASAIPGKTILENSVKHSKALNTLSSPGQSSFSHGTRNNSAKENMEKE KPVKRKMKSSVLPKASTLSKSSAVIEQGDCKNNALVPGTIQVNGHGGQPSKLVKRGPG RKPKVEVNTNSGEIIHKKRGRKPKKLQYAKPEDLEQNNVHPIRDEVLPSSTCNFLSET NNVKEDLLQKKNRGGRKPKRKMKTQKLDADLLVPASVKVLRRSNRKKIDDPIDEEEEF EELKGSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKA KANLIGW" misc_feature 468..740 /gene="PHIP" /gene_synonym="FLJ20705" /gene_synonym="ndrp" /gene_synonym="WDR11" /note="BROMO; Region: bromo domain" /db_xref="CDD:smart00297" misc_feature 903..1208 /gene="PHIP" /gene_synonym="FLJ20705" /gene_synonym="ndrp" /gene_synonym="WDR11" /note="BROMO; Region: bromo domain" /db_xref="CDD:smart00297" BASE COUNT 895 a 470 c 536 g 663 t ORIGIN 1 ctaccctttg ctgccttaaa cttgcttttc tagatcctga tactggtaaa ctgactggcg 61 gatcatttac catgaaatac catgatatgc ctgacgttat agatttccta gtcttgagac 121 aacaatttga tgatgcaaaa tacaggcgat ggaatatagg tgaccgcttc aggtctgtca 181 tagatgatgc ctggtggttt ggaacaatcg aaagccagga acctcttcaa cctgagtacc 241 ctgatagtct gtttcaatgc tacaatgttt gctgggacaa tggagataca gaaaagatga 301 gtccttggga tatggagctt atacctaata atgctgtatt tcctgaagaa ctaggtacca 361 gtgttccttt aactgatggt gagtgcagat cactaatcta taaacctctt gatggagaat 421 ggggtaccaa tcccagggat gaagaatgtg aaagaattgt ggcaggaata aaccagttga 481 tgacactaga tattgcctca gcatttgtgg cccccgtgga tctgcaagcc tatcccatgt 541 attgcacagt agtggcatat ccaacggatc taagtacaat taaacaaaga ctggaaaaca 601 ggttttacag gcgggtttct tccctaatgt gggaagttcg atatatagag cataatacac 661 gaacatttaa tgagcctgga agccctattg tgaaatctgc taaattcgtg actgatcttc 721 ttctacattt tataaaggat cagacttgtt ataacataat tccactttat aattcaatga 781 agaagaaagt tttgtctgat tctgaggatg aagagaaaga tgctgatgtg ccaggaactt 841 ctactcgaaa aaggaaggac catcagccta gaagaagatt acgtaataga gcccagtctt 901 acgatattca agcatggaag aaacagtgtg aagaattgtt aaatctcata tttcaatgtg 961 aagattcaga gcctttccgt cagccggtag atctccttga atatccagac tacagagaca 1021 tcattgacac tccaatggat tttgctaccg ttagagaaac tttagaggct gggaattatg 1081 agtcaccaat ggagttatgt aaagatgtca gacttatttt cagtaattcc aaagcatata 1141 caccaagcaa aagatcaagg atttacagca tgagtttgcg cttgtctgca ttctttgaag 1201 aacacattag ttcagtttta tcagattata aatctgctct tcgttttcat aaaagaaata 1261 ccataaccaa aaggaggaag aaaagaaaca gaagcagctc tgtttccagt agtgctgcat 1321 caagccctga aaggaaaaaa aggatcttaa aaccccagct aaaatcagaa agctctacct 1381 ctgcattctc tacacctaca cgatcaatac cgccaagaca caatgctgct cagataaacg 1441 gtaaaacaga atctagttct gtggttcgaa ccagaagcaa ccgagtggtt gtagatccag 1501 ttgtcactga gcaaccatct acttcttcag ctgcaaagac ttttattaca aaagctaatg 1561 catctgcaat accagggaaa acaatactag agaattctgt gaaacattcc aaagctttga 1621 atactctttc cagtcctggt caatccagtt ttagtcatgg cactaggaat aattctgcaa 1681 aagaaaacat ggaaaaggaa aagccagtca aacgtaaaat gaagtcatct gtactcccaa 1741 aggcgtccac tctttcaaag tcatcagctg tcattgagca aggagattgt aagaacaacg 1801 ctcttgtacc aggaaccatt caagtaaatg gccatggagg acagccatca aaacttgtga 1861 agaggggacc tggaaggaaa cctaaagtag aagttaatac caatagtggt gaaattatac 1921 acaagaaaag gggtagaaag cccaaaaagc tacagtatgc aaagccagaa gatttagagc 1981 aaaataatgt gcatcccatc agagatgaag tacttccttc ttcaacatgc aattttcttt 2041 ctgaaactaa taatgtaaag gaagatttgt tacagaaaaa gaatcgtgga ggtaggaagc 2101 ccaaaaggaa gatgaagaca caaaaattag atgcagatct cctagtccct gcaagtgtca 2161 aagtgttaag gagaagtaac cgaaaaaaga tagatgatcc tatagatgag gaagaagagt 2221 ttgaagaact caaaggctct gaaccccaca tgagaactag aaatcaaggt cgaaggacag 2281 ctttctataa tgaggatgac tctgaagagg agcaaaggca gctgttgttc gaagacacct 2341 ctttaacttt tggaacttct agtagaggac gagtccgaaa gttgactgaa aaagcaaaag 2401 ctaatttaat tggttggtaa cttgtaccaa aatattttac ttcaaaatct ataaagcagg 2461 tacagttaag gaataagtag aactaaggct tctgcttcct tgctgctgtg gtggagtagg 2521 gaatgttatg atttgatttg caaaaaaaaa aaaaaaaaaa aaaa //