LOCUS BC008878 1765 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens chondroitin polymerizing factor, mRNA (cDNA clone
IMAGE:4298587), partial cds.
ACCESSION BC008878
VERSION BC008878.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1765)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1765)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC008878.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: m Column: 23.
FEATURES Location/Qualifiers
source 1..1765
/db_xref="H-InvDB:HIT000034045"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4298587"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1765
/gene="CHPF"
/gene_synonym="CSS2"
/gene_synonym="FLJ22678"
/db_xref="GeneID:79586"
CDS <1..1107
/gene="CHPF"
/gene_synonym="CSS2"
/gene_synonym="FLJ22678"
/codon_start=1
/product="CHPF protein"
/protein_id="AAH08878.2"
/db_xref="GeneID:79586"
/translation="GSPRCPLRGADRADVADVLGTALEELNRRYHPALRLQKQQLVNG
YRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRVEILPVPYVTEASRLT
VLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQRVAHADVFAPVK
AHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFL
NRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPELGRDTGRFDRQAASEACFYNSD
YVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLS
EDLYHRCLQSVLEGLGSRTQLAMLLFEQEQGNST"
misc_feature 7..1089
/gene="CHPF"
/gene_synonym="CSS2"
/gene_synonym="FLJ22678"
/note="CHGN; Region: Chondroitin
N-acetylgalactosaminyltransferase"
/db_xref="CDD:pfam05679"
BASE COUNT 324 a 601 c 516 g 324 t
ORIGIN
1 ggctcacccc gctgcccact gcgtggggct gaccgggctg atgtggccga tgttctgggg
61 acagctctag aggagctgaa ccgccgctac cacccggcct tgcggctcca gaagcagcag
121 ctggtgaatg gctaccgacg ctttgatccg gcccggggta tggaatacac gctggacttg
181 cagctggagg cactgacccc ccagggaggc cgccggcccc tcactcgccg agtgcagctg
241 ctccggccgc tgagccgcgt ggagatcttg cctgtgccct atgtcactga ggcctcacgt
301 ctcactgtgc tgctgcctct agctgcggct gagcgtgacc tggcccctgg cttcttggag
361 gcctttgcca ctgcagcact ggagcctggt gatgctgcgg cagccctgac cctgctgcta
421 ctgtatgagc cgcgccaggc ccagcgcgtg gcccatgcag atgtcttcgc acctgtcaag
481 gcccacgtgg cagagctgga gcggcgtttc cccggtgccc gggtgccatg gctcagtgtg
541 cagacagccg caccctcacc actgcgcctc atggatctac tctccaagaa gcacccgctg
601 gacacactgt tcctgctggc cgggccagac acggtgctca cgcctgactt cctgaaccgc
661 tgccgcatgc atgccatctc cggctggcag gccttctttc ccatgcattt ccaagccttc
721 cacccagctg tggccccacc acaagggcct gggcccccag agctgggccg tgacactggc
781 cgctttgatc gccaggcagc cagcgaggcc tgcttctaca actccgacta cgtggcagcc
841 cgtgggcgcc tggcggcagc ctcagaacaa gaagaggagc tgctggagag cctggatgtg
901 tacgagctgt tcctccactt ctccagtctg catgtgctgc gggcggtgga gccggcgctg
961 ctgcagcgct accgggccca gacgtgcagc gcgaggctca gtgaggacct gtaccaccgc
1021 tgcctccaga gcgtgcttga gggcctcggc tcccgaaccc agctggccat gctactcttt
1081 gaacaggagc agggcaacag cacctgaccc caccctgtcc ccgtgggccg tggcatggcc
1141 acaccccacc ccacttctcc cccaaaacca gagccacctg ccagcctcgc tgggcagggc
1201 tggccgtagc cagaccccaa gctggcccac tggtcccctc tctggctctg tgggtccctg
1261 ggctctggac aagcactggg ggacgtgccc ccagagccac ccacttctca tcccaaaccc
1321 agtttccctg ccccctgacg ctgctgattc gggctgtggc ctccacgtat ttatgcagta
1381 cagtctgcct gacgccagcc ctgcctctgg gccctggggg ctgggctgta gaagagttgt
1441 tggggaagga gggagctgag gagggggcat ctcccaactt ctcccttttg gaccctgccg
1501 aagctccctg cctttaataa actggccaag tgtggacttg tgattcagag gttttgaaag
1561 ggtaggcagg cgtgggggag ggaggactgg ctgagcacca caggctcccc tgcccctgct
1621 ggggcctgcc tttcctttca cccgggacca agtcatgcat gtgcccagcc tcaccccggc
1681 ccccagtgcg tgcttggtca cacatacaca cagagaattc aaaaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaa
//