LOCUS BC008875 1877 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens poly-U binding splicing factor 60KDa, mRNA (cDNA clone
MGC:15202 IMAGE:4138778), complete cds.
ACCESSION BC008875
VERSION BC008875.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1877)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1877)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC008875.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: m Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17978510.
FEATURES Location/Qualifiers
source 1..1877
/db_xref="H-InvDB:HIT000034042"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15202 IMAGE:4138778"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1877
/gene="PUF60"
/gene_synonym="FIR"
/gene_synonym="RoBPI"
/gene_synonym="SIAHBP1"
/db_xref="GeneID:22827"
/db_xref="HGNC:HGNC:17042"
/db_xref="MIM:604819"
CDS 50..1678
/gene="PUF60"
/gene_synonym="FIR"
/gene_synonym="RoBPI"
/gene_synonym="SIAHBP1"
/codon_start=1
/product="poly-U binding splicing factor 60KDa"
/protein_id="AAH08875.1"
/db_xref="GeneID:22827"
/db_xref="HGNC:HGNC:17042"
/db_xref="MIM:604819"
/translation="MATATIALQVNGQQGGGSEPAAAAAVVAAGDKWKPPQGTDSIKM
ENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAA
QRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY
EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ
DLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG
GQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTP
GLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPT
LGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLR
NMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASET
HKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA"
BASE COUNT 449 a 539 c 577 g 312 t
ORIGIN
1 ggaaggagca agagtgggag gcgcgcgcgg aggccgcgac ggacgcaaga tggcgacggc
61 gaccatagct ctccaggtca atggccagca aggagggggg tccgagccgg cggcggcggc
121 ggcagtggtg gcagcgggag acaaatggaa acctccacag ggcacagact ccatcaagat
181 ggagaacggg cagagcacag ccgccaagct ggggctgcct cccctgacgc ccgagcagca
241 ggaggccctt cagaaggcca agaagtacgc catggagcag agcatcaaga gtgtgctggt
301 gaagcagacc atcgcgcacc agcagcagca gctcaccaac ctgcagatgg cggctcagcg
361 gcagcgggcg ctggccatca tgtgccgcgt ctacgtgggc tctatctact atgagctggg
421 ggaggacacc atccgccagg cctttgcccc ctttggcccc atcaagagca tcgacatgtc
481 ctgggactcc gtcaccatga agcacaaggg ctttgccttc gtggagtatg aggtccccga
541 agctgcacag ctggccttgg agcagatgaa ctcggtgatg ctggggggca ggaacatcaa
601 ggtgggcaga cccagcaaca tagggcaggc ccagcccatc atagaccagt tggctgagga
661 ggcacgggcc ttcaaccgca tctacgtggc ctctgtgcac caggacctct cagacgatga
721 catcaagagc gtgtttgagg cctttggcaa gatcaagtcc tgcacactgg cccgggaccc
781 cacaactggc aagcacaagg gctacggctt cattgagtac gagaaggccc agtcgtccca
841 agatgctgtg tcttccatga acctctttga cctgggtggc cagtacttgc gggtgggcaa
901 ggctgtcaca ccgcccatgc ccctactcac accagccacg cctggaggcc tcccacctgc
961 cgctgctgtg gcagctgctg cagccactgc caagatcaca gctcaggaag cagtggccgg
1021 agcagcggtg ctgggtaccc tgggcacacc tggactggtg tccccagcac tgaccctggc
1081 ccagcccctg ggcactttgc cccaggctgt catggctgcc caggcacctg gagtcatcac
1141 aggtgtgacc ccagcccgtc ctcctatccc ggtcaccatc ccctcggtgg gagtggtgaa
1201 ccccatcctg gccagccctc caacgctggg tctcctggag cccaagaagg agaaggaaga
1261 agaggagctg tttcccgagt cagagcggcc agagatgctg agcgagcagg agcacatgag
1321 catctcgggc agtagcgccc gacacatggt gatgcagaag ctgctccgca agcaggagtc
1381 tacagtgatg gttctgcgca acatggtgga ccccaaggac atcgatgatg acctggaagg
1441 ggaggtgaca gaggagtgtg gcaagttcgg ggccgtgaac cgcgtcatca tctaccaaga
1501 gaaacaaggc gaggaggagg atgcagaaat cattgtcaag atctttgtgg agttttccat
1561 agcctctgag actcataagg ccatccaggc cctcaatggc cgctggtttg ctggccgcaa
1621 ggtggtggct gaagtgtacg accaggagcg ttttgataac agtgacctct ctgcgtgaca
1681 gtggtccctc tccccggact tgcacttgtt ccttgtttcc tctgggtttt atagtgatac
1741 agtggtgtcc ccggggccag gcgcgctctg cccagcccag cctacagtgc ggataaaggt
1801 gcggatgctg ctggccctga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaa
//