LOCUS BC008853 2309 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member
13, mRNA (cDNA clone MGC:16573 IMAGE:4100291), complete cds.
ACCESSION BC008853
VERSION BC008853.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2309)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2309)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC008853.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: a Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22748628.
FEATURES Location/Qualifiers
source 1..2309
/db_xref="H-InvDB:HIT000087163"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16573 IMAGE:4100291"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2309
/gene="SLC39A13"
/gene_synonym="FLJ25785"
/db_xref="GeneID:91252"
CDS 43..1158
/gene="SLC39A13"
/gene_synonym="FLJ25785"
/codon_start=1
/product="SLC39A13 protein"
/protein_id="AAH08853.2"
/db_xref="GeneID:91252"
/translation="MPGCPCPGCGMAGPRLLFLTALALELLGRAGGSQPALRSRGTAT
ACRLDNKESESWGALLSGERLDTWICSLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAG
AWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASPGGEGQSLQQQQQLGLWVIAGIL
TFLALEKMFLDSKEEGTSQAPNKDPTAAAAALNGGHCLAQPAAEPGLGAVVRSIKVSG
YLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILLRAGFDR
WSAAKLQLSTALGGLLGAGFAICTQSPKGVVGCSPAAEETAAWVLPFTSGGFLYIALV
NVLPDLLEEEDPWRSLQQLLLLCAGIVVMVLFSLFVD"
misc_feature 301..1143
/gene="SLC39A13"
/gene_synonym="FLJ25785"
/note="Zip; Region: ZIP Zinc transporter. The ZIP family
consists of zinc transport proteins and many putative
metal transporters. The main contribution to this family
is from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although this
protein in not found within this family"
/db_xref="CDD:pfam02535"
BASE COUNT 414 a 737 c 702 g 456 t
ORIGIN
1 gggccgcccg gatcgccgcc gccgccgccg cacgtacgtg gcatgcctgg atgtccctgc
61 cctggctgtg gcatggcggg cccaaggctc ctcttcctca ctgcccttgc cctggagctc
121 ttgggaaggg ctgggggttc ccagccggcc ctccggagcc gggggactgc gacggcctgt
181 cgcctggaca acaaggaaag cgagtcctgg ggggctctgc tgagcggaga gcggctggac
241 acctggatct gctccctcct gggttccctc atggtggggc tcagtggggt cttcccgttg
301 cttgtcattc ccctagagat ggggaccatg ctgcgctcag aagctggggc ctggcgcctg
361 aagcagctgc tcagcttcgc cctgggggga ctcttgggca atgtgtttct gcatctgctg
421 cccgaagcct gggcctacac gtgcagcgcc agccctggtg gtgaggggca gagcctgcag
481 cagcagcaac agctggggct gtgggtcatt gctggcatcc tgaccttcct ggcgttggag
541 aagatgttcc tggacagcaa ggaggagggg accagccagg cccccaacaa agaccccact
601 gctgctgccg ccgcactcaa tggaggccac tgtctggccc agccggctgc agagcccggc
661 ctcggtgccg tggtccggag catcaaagtc agcggctacc tcaacctgct ggccaacacc
721 atcgataact tcacccacgg gctggctgtg gctgccagct tccttgtgag caagaagatc
781 gggctcctga caaccatggc catcctcctg catgagatcc cccatgaggt gggcgacttt
841 gccatcctgc tccgggccgg ctttgaccga tggagcgcag ccaagctgca actctcaaca
901 gcgctggggg gcctactggg cgctggcttc gccatctgta cccagtcccc caagggagta
961 gttgggtgtt ctcccgctgc agaggagacg gcagcctggg tcctgccctt cacctctggc
1021 ggctttctct acatcgcctt ggtgaacgtg ctccctgacc tcttggaaga agaggacccg
1081 tggcgctccc tgcagcagct gcttctgctc tgtgcgggca tcgtggtaat ggtgctgttc
1141 tcgctcttcg tggattaact ttccctgatg ccgacgcccc tgccccctgc agcaataaga
1201 tgctcggatt cactctgtga ccgcatatgt gagaggcaga gagggcgagt ggctgcgaga
1261 gagaatgagc ctcccgccag acaggaggga ggtgcgtgtg gatgtatgtg gtgtgcacat
1321 gtggccagag gtgtgtgcgc gagaccgaca ctgtgatccc tgtgctgggt ccggggccca
1381 gtgtagcgcc tgtccccagc catgctgtgg ttacctctcc ttgccgccct gtcaccttca
1441 cctcctggag taagcagcga ggaagagcag cactggtccc aagcagaggc cttgccctgc
1501 tgggaccccg ggagtgagag cagcccaagg atcccagggt gcagggaact ccagagctgc
1561 ccacctccca ctgccccctc agcacacaca cagtccccag gcggcctagg ggccaaggct
1621 ggggcggctt tggtcccttt tcctggccct tccttcccca cttctaagcc aaagaaagga
1681 gaggcaggtg ctcctgtacc ccagccccac tcagcactga cagtccccag ctcctagtag
1741 tgagctggga ggcgcttcct aagacccttt cctcagggct gccctgggag ctcattcctg
1801 gccaacacgc cctggcagca ccagcagctc ttgccacctc cagctgccaa acagcagcct
1861 gccgggcagg gagcagcccc aggccagaga ggcctcccgg tccagctcag ggatgctcct
1921 gccagcacag gggccaggga ctcctggagc aggcacatag tgagcccggg cagccctgcc
1981 cagctcaggc ccctttcctt ccccattgag gttggggtag gtgggggcgg tgagggctcc
2041 acgttgtcag cgctcaggaa tgtgctccgg cagagtgctg aagccataat ccccaaccat
2101 ttcccttggc tgacgcccag gtactcagct ggcccactcc acagccaggc ctggccctgc
2161 ccttcaccgt ggatgttttc agaagtggcc atcgagaggt ctggatggtt ttatagcaac
2221 tttgctgtga ttccgtttgt atctgtaaat atttgttcta tagataagat acaaataaat
2281 attatccaca taaaaaaaaa aaaaaaaaa
//