LOCUS BC008834 2264 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PHD finger protein 1, mRNA (cDNA clone MGC:12771
IMAGE:4304525), complete cds.
ACCESSION BC008834
VERSION BC008834.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2264)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2264)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008834.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: p Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13435396.
FEATURES Location/Qualifiers
source 1..2264
/db_xref="H-InvDB:HIT000034008_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12771 IMAGE:4304525"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2264
/gene="PHF1"
/gene_synonym="PHF2"
/db_xref="GeneID:5252"
/db_xref="HGNC:HGNC:8919"
/db_xref="MIM:602881"
CDS 205..1908
/gene="PHF1"
/gene_synonym="PHF2"
/codon_start=1
/product="PHD finger protein 1"
/protein_id="AAH08834.1"
/db_xref="GeneID:5252"
/db_xref="HGNC:HGNC:8919"
/db_xref="MIM:602881"
/translation="MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDG
LLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGN
RLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAM
LGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQC
LSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDRE
ILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHAR
MPPPVEPPTGDGALTSFPSGQGPGGGVSRPLGKRRRPEPEPLRRRQKGKVEELGPPSA
VRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQGSSGYNFRPTDARCLPSSPIRM
FASFHPSASTAGTSGDSGPPDRSPLELHIGFPTDIPKSAPHSMTASSSSVSSPSPGLP
RRSAPPSPLCRSLSPGTGGGVRGGVGYLSRGDPVRVLARRVRPDGSVQYLVEWGGGGI
F"
BASE COUNT 434 a 681 c 654 g 495 t
ORIGIN
1 gctgccgctg ctttggctgc tgcgtcatac gccccagagc cgccgggacg gaggggctgg
61 gcctggggac cccccggcct ccgcctgcac gcccccccac gcccggacgt gccctctccg
121 cgcgggggac tcgcctaggt ctcctacgtc tgcccctgcc cggctcccgg cggccccagc
181 tgtcaccggc ccccccagga tgcaatggcg cagccccccc ggctgagccg ctctggtgcc
241 tcctcacttt gggacccagc ttctcctgct cccacctctg gccccaggcc tcggctttgg
301 gagggtcaag atgtgctggc cagatggact gatgggctgc tatacttggg taccatcaaa
361 aaggtggaca gtgctaggga ggtgtgtctg gtccagtttg aggatgattc gcagtttctg
421 gttctatgga aagacattag ccctgctgcc ctccctggag aggaactcct ctgttgtgtc
481 tgtcgctctg agactgtggt ccctgggaac cggctggtca gctgtgagaa gtgtcgccat
541 gcttatcacc aggactgcca tgttcccagg gctccagccc ctggagaggg agagggcaca
601 tcctgggtat gccgccagtg tgtctttgcg atcgccacca agaggggagg tgccctgaag
661 aagggcccct atgcccgggc catgctgggt atgaagcttt ctctgccata tggactgaag
721 gggctggact gggatgctgg acatctgagc aaccgacagc agagttactg ttactgtggt
781 ggccctgggg agtggaacct gaaaatgctg cagtgccgga gctgcctgca gtggttccat
841 gaggcctgca cccagtgtct gagcaagccc ctcctctatg gggacaggtt ctatgaattt
901 gaatgctgtg tgtgtcgcgg gggccctgag aaagtccgga gactacagct tcgctgggtg
961 gatgtggccc atcttgtcct gtatcacctc agtgtttgct gtaagaagaa atactttgat
1021 tttgatcgtg agatcctccc cttcacttct gagaattggg acagtttgct cctgggggag
1081 ctttcagaca cccccaaagg agaacgttct tccaagctcc tctctgctct taacagccac
1141 aaggaccgtt tcatttcagg gagagagatt aagaagagga aatgtttgtt tggtctccat
1201 gctcggatgc ctccccctgt ggagccccct actggagatg gagcactcac cagcttccct
1261 tcagggcagg gccctggggg aggggtctca cgtcccctgg ggaagcgccg gaggccggag
1321 ccagagcccc tgaggaggag gcagaagggg aaagtggagg agctggggcc accctcagca
1381 gtgcgcaatc agcccgagcc ccaggagcag agggagcggg ctcatctgca gagggcactg
1441 caggcctcag tgtctccacc atcccccagc cctaaccaga gttaccaggg cagcagcggc
1501 tacaacttcc ggcccacaga tgcccgctgc ctgcccagca gccccatccg gatgtttgct
1561 tccttccacc cttctgccag caccgcaggg acctctgggg acagtggacc cccagacagg
1621 tcacccctgg aacttcacat tggtttcccc acagacatcc ctaaaagtgc cccccactcg
1681 atgactgcct catcttcctc agtttcatcc ccatccccag gtcttcctag acgctcagca
1741 cccccttctc ccctgtgccg tagtttgtct cctgggactg ggggaggagt ccgaggtggg
1801 gttggttacc tgtcccgagg ggaccctgtc cgggtccttg ctcggagagt acggcctgat
1861 ggctctgtgc agtacctggt tgagtgggga ggagggggca tcttctgaac agcctgcctc
1921 tgcccagctc cccattcaca cacaccggca ctttcatacc ctgacctctg acctcaccta
1981 cagctgggat gtacctggag agataggggg tagttctccc tactgcccag gctggaatcc
2041 aagagtgggg agtggggaag aggccctctt ctctaccctc cttcatgatt cctgacccct
2101 cccatccttc ccatttcctt tgatgttatt ttgttacagc tttttaaata ttttttaaaa
2161 ttatttaacc cctgggggca gagactgagg agggaggatg ataagggatc ccggactctg
2221 tatgattgaa ataaagagaa ataaacaaaa aaaaaaaaaa aaaa
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