LOCUS BC008831 1807 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAR-related orphan receptor A, mRNA (cDNA clone
MGC:12811 IMAGE:4121602), complete cds.
ACCESSION BC008831
VERSION BC008831.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1807)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1807)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC008831.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: f Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19743902.
FEATURES Location/Qualifiers
source 1..1807
/db_xref="H-InvDB:HIT000034005"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12811 IMAGE:4121602"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1807
/gene="RORA"
/gene_synonym="NR1F1"
/gene_synonym="ROR1"
/gene_synonym="ROR2"
/gene_synonym="ROR3"
/gene_synonym="RZRA"
/db_xref="GeneID:6095"
/db_xref="HGNC:HGNC:10258"
/db_xref="MIM:600825"
CDS 9..1580
/gene="RORA"
/gene_synonym="NR1F1"
/gene_synonym="ROR1"
/gene_synonym="ROR2"
/gene_synonym="ROR3"
/gene_synonym="RZRA"
/codon_start=1
/product="RAR-related orphan receptor A"
/protein_id="AAH08831.1"
/db_xref="GeneID:6095"
/db_xref="HGNC:HGNC:10258"
/db_xref="MIM:600825"
/translation="MESAPAAPDPAASEPGSSGADAAAGSRETPLNQESARKSEPPAP
VRRQSYSSTSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ
SNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV
QKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAV
SSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHL
AQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYV
VEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFK
SLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQ
LALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYK
ELFTSEFEPAMQIDG"
BASE COUNT 585 a 419 c 407 g 396 t
ORIGIN
1 gaaaaaacat ggagtcagct ccggcagccc ccgaccccgc cgccagcgag ccaggcagca
61 gcggcgcgga cgcggccgcc ggctccaggg agaccccgct gaaccaggaa tccgcccgca
121 agagcgagcc gcctgccccg gtgcgcagac agagctattc cagcaccagc agaggtatct
181 cagtaacgaa gaagacacat acatctcaaa ttgaaattat tccatgcaag atctgtggag
241 acaaatcatc aggaatccat tatggtgtca ttacatgtga aggctgcaag ggctttttca
301 ggagaagtca gcaaagcaat gccacctact cctgtcctcg tcagaagaac tgtttgattg
361 atcgaaccag tagaaaccgc tgccaacact gtcgattaca gaaatgcctt gccgtaggga
421 tgtctcgaga tgctgtaaaa tttggccgaa tgtcaaaaaa gcagagagac agcttgtatg
481 cagaagtaca gaaacaccgg atgcagcagc agcagcgcga ccaccagcag cagcctggag
541 aggctgagcc gctgacgccc acctacaaca tctcggccaa cgggctgacg gaacttcacg
601 acgacctcag taactacatt gacgggcaca cccctgaggg gagtaaggca gactccgccg
661 tcagcagctt ctacctggac atacagcctt ccccagacca gtcaggtctt gatatcaatg
721 gaatcaaacc agaaccaata tgtgactaca caccagcatc aggcttcttt ccctactgtt
781 cgttcaccaa cggcgagact tccccaactg tgtccatggc agaattagaa caccttgcac
841 agaatatatc taaatcgcat ctggaaacct gccaatactt gagagaagag ctccagcaga
901 taacgtggca gaccttttta caggaagaaa ttgagaacta tcaaaacaag cagcgggagg
961 tgatgtggca attgtgtgcc atcaaaatta cagaagctat acagtatgtg gtggagtttg
1021 ccaaacgcat tgatggattt atggaactgt gtcaaaatga tcaaattgtg cttctaaaag
1081 caggttctct agaggtggtg tttatcagaa tgtgccgtgc ctttgactct cagaacaaca
1141 ccgtgtactt tgatgggaag tatgccagcc ccgacgtctt caaatcctta ggttgtgaag
1201 actttattag ctttgtgttt gaatttggaa agagtttatg ttctatgcac ctgactgaag
1261 atgaaattgc attattttct gcatttgtac tgatgtcagc agatcgctca tggctgcaag
1321 aaaaggtaaa aattgaaaaa ctgcaacaga aaattcagct agctcttcaa cacgtcctac
1381 agaagaatca ccgagaagat ggaatactaa caaagttaat atgcaaggtg tctacattaa
1441 gagccttatg tggacgacat acagaaaagc taatggcatt taaagcaata tacccagaca
1501 ttgtgcgact tcattttcct ccattataca aggagttgtt cacttcagaa tttgagccag
1561 caatgcaaat tgatgggtaa atgttatcac ctaagcactt ctagaatgtc tgaagtacaa
1621 acatgaaaaa caaacaaaaa aattaaccga gacactttat atggccctgc acagacctgg
1681 agcgccacac actgcacatc ttttggtgat cggggtcagg caaaggaggg gaaacaatga
1741 aaacaaataa aagttgaact tgtttttctc atgaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaa
//