LOCUS BC008829 2039 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens short stature homeobox 2, mRNA (cDNA clone MGC:12649
IMAGE:4122010), complete cds.
ACCESSION BC008829
VERSION BC008829.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2039)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2039)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008829.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: f Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6031199.
FEATURES Location/Qualifiers
source 1..2039
/db_xref="H-InvDB:HIT000034003"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12649 IMAGE:4122010"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2039
/gene="SHOX2"
/gene_synonym="OG12"
/gene_synonym="OG12X"
/gene_synonym="OGI2X"
/gene_synonym="SHOT"
/db_xref="GeneID:6474"
/db_xref="MIM:602504"
CDS 140..1207
/gene="SHOX2"
/gene_synonym="OG12"
/gene_synonym="OG12X"
/gene_synonym="OGI2X"
/gene_synonym="SHOT"
/codon_start=1
/product="SHOX2 protein"
/protein_id="AAH08829.1"
/db_xref="GeneID:6474"
/db_xref="MIM:602504"
/translation="MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCT
EAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAA
ERSREPGSPRLTEGRRKPTKAEVQATLLLPGEAFRFLVSPELKDRKEDAKGMEDEGQT
KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK
CRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQ
LDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTS
KNSSIADLRLKAKKHAAALGL"
misc_feature 632..802
/gene="SHOX2"
/gene_synonym="OG12"
/gene_synonym="OG12X"
/gene_synonym="OGI2X"
/gene_synonym="SHOT"
/note="homeobox; Region: Homeobox domain"
/db_xref="CDD:pfam00046"
BASE COUNT 543 a 520 c 612 g 364 t
ORIGIN
1 ccacctccct ctcctccccc acctcctgtc ccattgatgt gttattattg ggggggctgg
61 agcagtaaaa aaagaagaag gaaaaaaaga gcggggctct gctggcagag gttgagcgcc
121 gggctgacgt gcggcggcga tggaagaact tacggcgttc gtctccaagt cttttgacca
181 gaaagtgaag gagaagaagg aggcgatcac gtaccgggag gtgctggaga gcgggccgct
241 gcgcggggcc aaggagccga ccggctgcac cgaggcgggc cgcgacgacc gcagcagccc
301 ggcagtccgg gcggccggcg gaggcggcgg cggaggaggc ggaggcggcg gcggaggagg
361 cggaggaggt gtaggaggag gaggagcagg cggaggagct ggaggagggc gctctcccgt
421 ccgggagctg gacatgggcg ccgccgagag aagcagggag ccgggcagcc cgcgactgac
481 ggagggtaga aggaagccaa cgaaagctga ggtccaggct acgctgcttc tcccgggcga
541 ggcgtttcgg tttcttgtgt ccccggagct gaaagatcgc aaagaggatg cgaaagggat
601 ggaggacgaa ggccagacca aaatcaagca gaggcgaagt cggaccaatt tcaccctgga
661 acaactcaat gagctggaga ggctttttga cgagacccac tatcccgacg ccttcatgcg
721 agaggaactg agccagcgac tgggcctgtc ggaggcccga gtgcaggttt ggtttcaaaa
781 tcgaagagct aaatgtagaa aacaagaaaa tcaactccat aaaggtgttc tcataggggc
841 cgccagccag tttgaagctt gtagagtcgc accttatgtc aacgtaggtg ctttaaggat
901 gccatttcag caggatagtc attgcaacgt gacgcccttg tcctttcagg ttcaggcgca
961 gctgcagctg gacagcgctg tggcgcacgc gcaccaccac ctgcatccgc acctggccgc
1021 gcacgcgccc tacatgatgt tcccagcacc gcccttcgga ctgccgctcg ccacgctggc
1081 cgcggattcg gcttccgccg cctcggtagt ggcggccgca gcagccgcca agaccaccag
1141 caagaactcc agcatcgccg atctcagact gaaagccaaa aagcacgccg cagccctggg
1201 tctgtgacgc caacgccagc accaatgtcg cgcctgtccc gcggcactca gcctgcacgc
1261 cctccgcgcc ccgctgcttc tccgttaccc ctttgagacc tcgggagccg gccctcttcc
1321 cgcctcactg accatccctc gtcccctatc gcatcttgga ctcggaaagc cagactccac
1381 gcaggaccag ggatctcacg aggcacgcag gctccgtggc tcctgcccgt tttcctactc
1441 gagggcctag aattgggttt tgtaggagcg ggtttggggg agtctggaga gagactggac
1501 aggggagtgc tggaaccgcg gagtttggct caccgcaaag ctacaacgat ggactcttgc
1561 atagaaaaaa aaatcttgtt aacaatgaaa aaatgagcaa acaaaaaaat cgaaagacaa
1621 acgggagaga aaaagaggaa ggaaacttat ttcttaactg ctatttggca gaagctgaaa
1681 ttggagaacc aaggagcaaa aacaaatttt aaaattaaag tattttatac atttaaaaat
1741 atggaaaaac aacccagacg attctcgaga gactgggggg agttaccaac ttaaatgtgt
1801 gtttttaaaa atgcgctaag aaggcaaagc agaaagaaga ggtatactta tttaaaaaac
1861 taagatgaaa aaagtgcgca gctgggaagt tcacaggttt tgaaactgac ctttttctgc
1921 gaagttcacg ttaatacgag aaatttgatg agagaggcgg gcctcctttt acgttgaatc
1981 agatgctttg agtttaaacc caccatgtat ggaagagcaa gaaaaaaaaa aaaaaaaaa
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