LOCUS BC008789 2266 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox D3, mRNA (cDNA clone MGC:3852 IMAGE:3628279),
complete cds.
ACCESSION BC008789
VERSION BC008789.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2266)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2266)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008789.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: o Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23510372.
FEATURES Location/Qualifiers
source 1..2266
/db_xref="H-InvDB:HIT000033969"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3852 IMAGE:3628279"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2266
/gene="HOXD3"
/gene_synonym="Hox-4.1"
/gene_synonym="MGC10470"
/db_xref="GeneID:3232"
/db_xref="HGNC:HGNC:5137"
/db_xref="MIM:142980"
CDS 109..1407
/gene="HOXD3"
/gene_synonym="Hox-4.1"
/gene_synonym="MGC10470"
/codon_start=1
/product="homeobox D3"
/protein_id="AAH08789.1"
/db_xref="GeneID:3232"
/db_xref="HGNC:HGNC:5137"
/db_xref="MIM:142980"
/translation="MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYS
TPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGG
GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQI
FPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRY
LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGA
AGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEF
EPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCA
AQIPGNHHHGPCDPHPTYTDLSAHHSSQGRLPEAPKLTHL"
BASE COUNT 517 a 710 c 594 g 445 t
ORIGIN
1 cacacacaat tatgtatgtg tgtgttcacc tggagcctgg gggccggccc agctctctca
61 ggattcagca gacattggag gtggcagtga aggatacagt ggtagtcaat gttatttgag
121 cagggtcagc aggccctgga gcttcctgag tgcacaatgc agaaggctgc ttactatgaa
181 aacccaggac tgtttggagg ctatggctac agcaaaacta cggacactta cggctacagc
241 accccccacc agccctaccc accccctgct gctgccagct ccctggacac tgactatcca
301 ggttctgcct gctccatcca gagctctgcc cctctgagag ccccagccca caaaggagct
361 gaactcaatg gcagctgcat gcggccgggc actgggaaca gccagggtgg gggtggtggc
421 agccagcctc ctggtctgaa ctcagagcag cagccaccac aaccccctcc tccaccaccg
481 accctgcccc catcttcacc caccaatcct ggaggtggag tgcctgccaa gaagcccaaa
541 ggtgggccca atgcttctag ctcctcagcc accatcagca agcagatctt cccctggatg
601 aaagagtctc gacagaactc caagcagaag aacagctgtg ccactgcagg agagagctgc
661 gaggacaaga gcccgccagg cccagcatcc aagcgggtac gcacggcata cacgagcgcg
721 cagctggtgg aattggaaaa ggaattccac ttcaaccgct acttgtgccg gccgcgccgc
781 gtggagatgg ccaacctgct gaatctcacg gaacgccaga tcaagatctg gttccagaac
841 cggcgcatga agtacaagaa ggaccagaag gccaagggca tcctgcactc gccggctagc
901 cagtcccctg agcgcagccc accgctcggc ggcgccgctg gccacgtggc ctactccggc
961 cagctgccgc cagtgcccgg cctggcctac gacgcgccct cgccgcctgc tttcgccaaa
1021 tcacagccca atatgtacgg cctggccgcc tacacggcgc cactcagcag ctgcctgcca
1081 caacagaagc gctacgcagc gccggagttc gagccccatc ccatggcgag caacggcggc
1141 ggcttcgcca gcgccaacct gcagggcagc ccggtgtacg tgggcggcaa cttcgtcgag
1201 tccatggcgc ccgcgtccgg gcctgtcttc aacctgggcc acctctcgca cccgtcgtcg
1261 gccagcgtgg actacagttg cgccgcgcag attccaggca accaccacca tggaccttgc
1321 gaccctcatc ccacctacac agatctctcg gcccaccact cgtctcaggg acgactgccg
1381 gaggctccca aactgacgca tctgtagcgg ccgccgccag cccgaactcg cggcaaaatt
1441 acctctcttg ctgtagtggt ggggtagagg gtggggcccg cggggcagtt cgggaacccc
1501 cttccccgct cttgccctgc cgccgcctcc cgggtctcag gcctccagcg gcggaggcgc
1561 aggcgaccgg gcctcccctc catgggcgtc ctttgggtga ctcgccataa atcagccgca
1621 aggatccttc cctgtaaatt tgacagtgcc acatactgcg gaccaaggga ctccaatctg
1681 gtaatggtgt cccaaaggta agtctgagac ccatcggcgg cgcgccctgc agagggacca
1741 gagcttggag agtcttgggc ctggcccgcg tctagcttag tttcagagac cttaatttat
1801 attctccttc ctgtgccgta aggattgcat cggactaaac tatctgtatt tattatttga
1861 agcgagtcat ttcgttccct gattatttat ccttgtctga atgtatttat gtgtatattt
1921 gtagatttat ccagccgagc ttaggaattc gcttccaggc cgtgggggcc acatttcacc
1981 tccttagtcc ccctggtctg aactagttga gagagtagtt ttgaacagtc gtaaccgtgg
2041 ctggtgtttg tagttgacat aaaggattaa gaccgcaaat tgtccttcat gggtagagtc
2101 aggaagcccg gtggcgtggc acaacacact ttggtcattt ctcaaaaacc acagtcctca
2161 ccacagttta ttgatttcaa attgtctggt actattggaa caaatattta gaataaaaaa
2221 atttcccagt caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
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