LOCUS BC008727 2432 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinoic acid receptor, alpha, mRNA (cDNA clone
MGC:1651 IMAGE:3163891), complete cds.
ACCESSION BC008727
VERSION BC008727.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2432)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2432)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008727.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: g Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4506418.
FEATURES Location/Qualifiers
source 1..2432
/db_xref="H-InvDB:HIT000033927"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1651 IMAGE:3163891"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2432
/gene="RARA"
/gene_synonym="NR1B1"
/gene_synonym="RAR"
/db_xref="GeneID:5914"
/db_xref="HGNC:HGNC:9864"
/db_xref="MIM:180240"
CDS 456..1844
/gene="RARA"
/gene_synonym="NR1B1"
/gene_synonym="RAR"
/codon_start=1
/product="retinoic acid receptor, alpha"
/protein_id="AAH08727.1"
/db_xref="GeneID:5914"
/db_xref="HGNC:HGNC:9864"
/db_xref="MIM:180240"
/translation="MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTL
QHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGV
SACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRN
DRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRV
SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTR
YTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICL
ICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGA
ERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSP
SSNRSSPATHSP"
BASE COUNT 508 a 820 c 667 g 437 t
ORIGIN
1 cagaagcagg ggggaatcct gaatcgagct gagagggctt ccccggttct cctgggaacc
61 ccatcggccc cctgccagca cacacctgag cagcatcaca ggacatggcc ccctcagcca
121 cctagctggg gcccatctag gagtggcatc ttttttggtg ccctgaaggc cagctctgga
181 ccttcccagg aaaagtgcca gctcacagaa ctgcttgacc aaaggaccgg ctcttgagac
241 atcccccaac ccacctggcc cccagctagg gtgggggctc caggagactg agattagcct
301 gccctctttg gacagcagct ccaggacagg gcgggtgggc tgaccaccca aaccccatct
361 gggcccaggc cccatgcccc gaggaggggt ggtctgaagc ccaccagagc cccctgccag
421 actgtctgcc tcccttctga ctgtggccgc ttggcatggc cagcaacagc agctcctgcc
481 cgacacctgg gggcgggcac ctcaatgggt acccggtgcc tccctacgcc ttcttcttcc
541 cccctatgct gggtggactc tccccgccag gcgctctgac cactctccag caccagcttc
601 cagttagtgg atatagcaca ccatccccag ccaccattga gacccagagc agcagttctg
661 aagagatagt gcccagccct ccctcgccac cccctctacc ccgcatctac aagccttgct
721 ttgtctgtca ggacaagtcc tcaggctacc actatggggt cagcgcctgt gagggctgca
781 agggcttctt ccgccgcagc atccagaaga acatggtgta cacgtgtcac cgggacaaga
841 actgcatcat caacaaggtg acccggaacc gctgccagta ctgccgactg cagaagtgct
901 ttgaagtggg catgtccaag gagtctgtga gaaacgaccg aaacaagaag aagaaggagg
961 tgcccaagcc cgagtgctct gagagctaca cgctgacgcc ggaggtgggg gagctcattg
1021 agaaggtgcg caaagcgcac caggaaacct tccctgccct ctgccagctg ggcaaataca
1081 ctacgaacaa cagctcagaa caacgtgtct ctctggacat tgacctctgg gacaagttca
1141 gtgaactctc caccaagtgc atcattaaga ctgtggagtt cgccaagcag ctgcccggct
1201 tcaccaccct caccatcgcc gaccagatca ccctcctcaa ggctgcctgc ctggacatcc
1261 tgatcctgcg gatctgcacg cggtacacgc ccgagcagga caccatgacc ttctcggacg
1321 ggctgaccct gaaccggacc cagatgcaca acgctggctt cggccccctc accgacctgg
1381 tctttgcctt cgccaaccag ctgctgcccc tggagatgga tgatgcggag acggggctgc
1441 tcagcgccat ctgcctcatc tgcggagacc gccaggacct ggagcagccg gaccgggtgg
1501 acatgctgca ggagccgctg ctggaggcgc taaaggtcta cgtgcggaag cggaggccca
1561 gccgccccca catgttcccc aagatgctaa tgaagattac tgacctgcga agcatcagcg
1621 ccaagggggc tgagcgggtg atcacgctga agatggagat cccgggctcc atgccgcctc
1681 tcatccagga aatgttggag aactcagagg gcctggacac tctgagcgga cagccggggg
1741 gtggggggcg ggacgggggt ggcctggccc ccccgccagg cagctgtagc cccagcctca
1801 gccccagctc caacagaagc agcccggcca cccactcccc gtgaccgccc acgccacatg
1861 gacacagccc tcgccctccg ccccggcttt tctctgcctt tctaccgacc atgtgacccc
1921 gcaccagccc tgcccccacc tgccctcccg ggcagtactg gggaccttcc ctgggggacg
1981 gggagggagg aggcagcgac tccttggaca gaggcctggg ccctcagtgg actgcctgct
2041 cccacagcct gggctgacgt cagaggccga ggccaggaac tgagtgaggc ccctggtcct
2101 gggtctcagg atgggtcctg ggggcctcgt gttcatcaag acacccctct gcccagctca
2161 ccacatcttc atcaccagca aacgccagga cttggctccc ccatcctcag aactcacaag
2221 ccattgctcc ccagctgggg aacctcaacc tcccccctgc ctcggttggt gacagagggg
2281 gtgggacagg ggcggggggt tccccctgta cataccctgc cataccaacc ccaggtatta
2341 attctcgctg gttttgtttt tattttaatt ttttttgttt tgattttttt aataagaatt
2401 ttcattttaa gcacaaaaaa aaaaaaaaaa aa
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