LOCUS BC008712 1076 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens small trans-membrane and glycosylated protein, mRNA
(cDNA clone MGC:16004 IMAGE:3546069), complete cds.
ACCESSION BC008712
VERSION BC008712.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1076)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1076)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: n Column: 24.
FEATURES Location/Qualifiers
source 1..1076
/db_xref="H-InvDB:HIT000033913"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16004 IMAGE:3546069"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1076
/gene="LOC57228"
/db_xref="GeneID:57228"
CDS 179..472
/gene="LOC57228"
/codon_start=1
/product="small trans-membrane and glycosylated protein"
/protein_id="AAH08712.2"
/db_xref="GeneID:57228"
/translation="MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVV
FLTLLSVVILIFFYLYKNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI"
BASE COUNT 276 a 298 c 258 g 244 t
ORIGIN
1 gccacctcgg ccgtggcagg aaccgaaacc cggagcggcc gaagctcagc gctccgctgg
61 ggcagagggt cgcggcggct gggaacgccg ctccccgacg caccggccgc ccccagcgca
121 gcgcgctccg cggggtgctg atctgcctct tctccaagaa actcaaccac tagtgacaat
181 gaccagcctc ctgactactc cttctccaag agaagaactg atgaccaccc caattttaca
241 gcccactgag gccctgtccc cagaagatgg agccagcaca gcactcattg cagttgttat
301 caccgttgtc ttccttaccc tgctctcggt cgtgatcttg atcttctttt acctgtacaa
361 gaacaaaggc agctacgtca cctatgaacc tacagaaggt gagcccagtg ccatcgtcca
421 gatggagagt gacttggcca agggcagcga gaaagaggaa tatttcatct aatgactccc
481 aggccccaag gagcttattc ctggctccat cgctaacacg ttgactgctt attatgggaa
541 agttttctct gaagccaggg agaagcattg attgatgtgg gcaaatccaa gctccagcca
601 ggtcgcagtc ccaaatgccg acatcactga ctccagggac cagggacatg gagaaagctg
661 tttatgatat ctttaaccag gccctcttac tagagctggt gtttgtgact ggccaacaag
721 atgtggctat gccaggggac atctgagtat gtgcccagtc atcttttttc acaggttgaa
781 gggagagaaa agattttgag ttaaggtcat tggctgctct actctgtccc ctacctggtc
841 acctagtgat agccccagtg gagatactgt ccatacaagg tcttcccaga ggctggatac
901 cacagtaaaa ggccaggcca ggaggggtag gagactatgg agatcttacc tcctgataaa
961 tgtgctacac cccctaatct gagcccttcc tttccgtgtt ccccaacaac ctcatgctta
1021 cgtgattttt attcaaatta aaaattttca ttgctacaaa aaaaaaaaaa aaaaaa
//