LOCUS BC008621 829 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-C motif) ligand 13, mRNA (cDNA clone
MGC:17134 IMAGE:4184250), complete cds.
ACCESSION BC008621
VERSION BC008621.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 829)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 829)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: l Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22538799.
FEATURES Location/Qualifiers
source 1..829
/db_xref="H-InvDB:HIT000033863"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17134 IMAGE:4184250"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..829
/gene="CCL13"
/gene_synonym="CKb10"
/gene_synonym="MCP-4"
/gene_synonym="MGC17134"
/gene_synonym="NCC-1"
/gene_synonym="NCC1"
/gene_synonym="SCYL1"
/db_xref="GeneID:6357"
/db_xref="HGNC:HGNC:10611"
/db_xref="MIM:601391"
CDS 39..335
/gene="CCL13"
/gene_synonym="CKb10"
/gene_synonym="MCP-4"
/gene_synonym="MGC17134"
/gene_synonym="NCC-1"
/gene_synonym="NCC1"
/gene_synonym="SCYL1"
/codon_start=1
/product="chemokine (C-C motif) ligand 13"
/protein_id="AAH08621.1"
/db_xref="GeneID:6357"
/db_xref="HGNC:HGNC:10611"
/db_xref="MIM:601391"
/translation="MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKIS
LQRLKSYVITTSRCPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT"
BASE COUNT 227 a 175 c 186 g 241 t
ORIGIN
1 aagaaacatt gtgaaatctc caactcttaa ccttcaacat gaaagtctct gcagtgcttc
61 tgtgcctgct gctcatgaca gcagctttca acccccaggg acttgctcag ccagatgcac
121 tcaacgtccc atctacttgc tgcttcacat ttagcagtaa gaagatctcc ttgcagaggc
181 tgaagagcta tgtgatcacc accagcaggt gtccccagaa ggctgtcatc ttcagaacca
241 aactgggcaa ggagatctgt gctgacccaa aggagaagtg ggtccagaat tatatgaaac
301 acctgggccg gaaagctcac accctgaaga cttgaactct gctaccccta ctgaaatcaa
361 gctggagtac gtgaaatgac ttttccattc tcctctggcc tcctcttcta tgctttggaa
421 tacttctacc ataattttca aataggatgc attcggtttt gtgattcaaa atgtactatg
481 tgttaagtaa tattggctat tatttgactt gttgctggtt tggagtttat ttgagtattg
541 ctgatctttt ctaaagcaag gccttgagca agtaggttgc tgtctctaag cccccttccc
601 ttccactatg agctgctggc agtgggtttg tattcggttc ccaggggttg agagcatgcc
661 tgtgggagtc atggacatga agggatgctg caatgtagga aggagagctc tttgtgaatg
721 tgaggtgttg ctaaatatgt tattgtggaa agatgaatgc aatagtagga ctgctgacat
781 tttgcagaaa atacatttta tttaaaatct cctaaaaaaa aaaaaaaaa
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