LOCUS BC008608 1778 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SPARC related modular calcium binding 1, mRNA (cDNA
clone MGC:18262 IMAGE:4158532), complete cds.
ACCESSION BC008608
VERSION BC008608.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1778)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1778)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: g Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1778
/db_xref="H-InvDB:HIT000033860"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18262 IMAGE:4158532"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1778
/gene="SMOC1"
/db_xref="GeneID:64093"
/db_xref="HGNC:HGNC:20318"
/db_xref="MIM:608488"
CDS 251..1555
/gene="SMOC1"
/codon_start=1
/product="SPARC related modular calcium binding 1"
/protein_id="AAH08608.1"
/db_xref="GeneID:64093"
/db_xref="HGNC:HGNC:20318"
/db_xref="MIM:608488"
/translation="MLPARCARLLTPHLLLVLVQLSPARGHRTTGPRFLISDRDPQCN
LHCSRTQPKPICASDGRSYESMCEYQRAKCRDPTLGVVHRGRCKDAGQSKCRLERAQA
LEQAKKPQEAVFVPECGEDGSFTQVQCHTYTGYCWCVTPDGKPISGSSVQNKTPVCSG
SVTDKPLSQGNSGRKDDGSKPTPTMETQPVFDGDEITAPTLWIKHLVIKDSKLNNTNI
RNSEKVYSCDQERQSALEEAQQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCVLVDT
GRPLPGTSTRYVMPSCESDARAKTTEADDPFKDRELPGCPEGKKMEFITSLLDALTTD
MVQAINSAAPTGGGRFSEPDPSHTLEERVVHWYFSQLDSNSSNDINKREMKPFKRYVK
KKAKPKKCARRFTDYCDLNKDKVISLPELKGCLGVSKEGRLV"
BASE COUNT 424 a 533 c 502 g 319 t
ORIGIN
1 gctgccgcct gggccccgcc gagcggagct agcgccgcgc gcagagcaca cgctcgcgct
61 ccagctcccc tcctgcgcgg ttcatgactg tgtcccctga ccgcagcctc tgcgagcccc
121 cgccgcagga ccacggcccg ctccccgccg ccgcgagggc cccgagcgaa ggaaggaagg
181 gaggcgcgct gtgcgccccg cggagcccgc gaaccccgct cgctgccggc tgcccagcct
241 ggctggcacc atgctgcccg cgcgctgcgc ccgcctgctc acgccccact tgctgctggt
301 gttggtgcag ctgtcccctg ctcgcggcca ccgcaccaca ggccccaggt ttctaataag
361 tgaccgtgac ccacagtgca acctccactg ctccaggact caacccaaac ccatctgtgc
421 ctctgatggc aggtcctacg agtccatgtg tgagtaccag cgagccaagt gccgagaccc
481 gaccctgggc gtggtgcatc gaggtagatg caaagatgct ggccagagca agtgtcgcct
541 ggagcgggct caagccctgg agcaagccaa gaagcctcag gaagctgtgt ttgtcccaga
601 gtgtggcgag gatggctcct ttacccaggt gcagtgccat acttacactg ggtactgctg
661 gtgtgtcacc ccggatggga agcccatcag tggctcttct gtgcagaata aaactcctgt
721 atgttcaggt tcagtcaccg acaagccctt gagccagggt aactcaggaa ggaaagatga
781 cgggtctaag ccgacaccca cgatggagac ccagccggtg ttcgatggag atgaaatcac
841 agccccaact ctatggatta aacacttggt gatcaaggac tccaaactga acaacaccaa
901 cataagaaat tcagagaaag tctattcgtg tgaccaggag aggcagagtg ccctggaaga
961 ggcccagcag aatccccgtg agggtattgt catccctgaa tgtgcccctg ggggactcta
1021 taagccagtg caatgccacc agtccactgg ctactgctgg tgtgtgctgg tggacacagg
1081 gcgcccgctg cctgggacct ccacacgcta cgtgatgccc agttgtgaga gcgacgccag
1141 ggccaagact acagaggcgg atgacccctt caaggacagg gagctaccag gctgtccaga
1201 agggaagaaa atggagttta tcaccagcct actggatgct ctcaccactg acatggttca
1261 ggccattaac tcagcagcgc ccactggagg tgggaggttc tcagagccag accccagcca
1321 caccctggag gagcgggtag tgcactggta tttcagccag ctggacagca atagcagcaa
1381 cgacattaac aagcgggaga tgaagccctt caagcgctac gtgaagaaga aagccaagcc
1441 caagaaatgt gcccggcgtt tcaccgacta ctgtgacctg aacaaagaca aggtcatttc
1501 actgcctgag ctgaagggct gcctgggtgt tagcaaagaa ggacgcctcg tctaaggagc
1561 agaaaaccca agggcaggtg gagagtccag ggaggcagga tggatcacca gacacctaac
1621 cttcagcgtt gcccatggcc ctgccacatc ccgtgtaaca taagtggtgc ccaccatgtt
1681 tgcactttta ataactctta cttgcgtgtt ttgtttttgg tttcatttta aaacaccaat
1741 atctaatacc acagtgggaa aagaaaaaaa aaaaaaaa
//