LOCUS BC008568 1801 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens chitinase 3-like 1 (cartilage glycoprotein-39), mRNA (cDNA clone MGC:17093 IMAGE:4212748), complete cds. ACCESSION BC008568 VERSION BC008568.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1801) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1801) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: m Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4557017. FEATURES Location/Qualifiers source 1..1801 /db_xref="H-InvDB:HIT000033841" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17093 IMAGE:4212748" /tissue_type="Brain, glioblastoma with EGFR amplification" /clone_lib="NCI_CGAP_Brn64" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1801 /gene="CHI3L1" /gene_synonym="GP39" /gene_synonym="HC-gp39" /gene_synonym="HCGP-3P" /gene_synonym="YKL40" /db_xref="GeneID:1116" /db_xref="HGNC:HGNC:1932" /db_xref="MIM:601525" CDS 118..1269 /gene="CHI3L1" /gene_synonym="GP39" /gene_synonym="HC-gp39" /gene_synonym="HCGP-3P" /gene_synonym="YKL40" /codon_start=1 /product="chitinase 3-like 1 (cartilage glycoprotein-39)" /protein_id="AAH08568.1" /db_xref="GeneID:1116" /db_xref="HGNC:HGNC:1932" /db_xref="MIM:601525" /translation="MGVKASQTGFVVLVLLQCCSAYKLVCYYTSWSQYREGDGSCFPD ALDRFLCTHIIYSFANISNDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGGWNFG SQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKQHFTTLIKEMKAE FIKEAQPGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGH HSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLASSETGVGA PISGPGIPGRFTKEAGTLAYYEICDFLRGATVHRILGQQVPYATKGNQWVGYDDQESV KSKVQYLKDRQLAGAMVWALDLDDFQGSFCGQDLRFPLTNAIKDALAAT" BASE COUNT 450 a 518 c 462 g 371 t ORIGIN 1 ggacaggtat ataaaggaag tacagggcct ggggaagagg ccctgtctag gtagctggca 61 ccaggagccg tgggcaaggg aagaggccac accctgccct gctctgctgc agccagaatg 121 ggtgtgaagg cgtctcaaac aggctttgtg gtcctggtgc tgctccagtg ctgctctgca 181 tacaaactgg tctgctacta caccagctgg tcccagtacc gggaaggcga tgggagctgc 241 ttcccagatg cccttgaccg cttcctctgt acccacatca tctacagctt tgccaatata 301 agcaacgatc acatcgacac ctgggagtgg aatgatgtga cgctctacgg catgctcaac 361 acactcaaga acaggaaccc caacctgaag actctcttgt ctgtcggagg atggaacttt 421 gggtctcaaa gattttccaa gatagcctcc aacacccaga gtcgccggac tttcatcaag 481 tcagtaccgc catttctgcg cacccatggc tttgatgggc tggaccttgc ctggctctac 541 cctggacgga gagacaaaca gcattttacc accctaatca aggaaatgaa ggccgaattt 601 ataaaggaag cccagccagg gaaaaagcag ctcctgctca gcgcagcact gtctgcgggg 661 aaggtcacca ttgacagcag ctatgacatt gccaagatat cccaacacct ggatttcatt 721 agcatcatga cctacgattt tcatggagcc tggcgtggga ccacaggcca tcacagtccc 781 ctgttccgag gtcaggagga tgcaagtcct gacagattca gcaacactga ctatgctgtg 841 gggtacatgt tgaggctggg ggctcctgcc agtaagctgg tgatgggcat ccccaccttc 901 gggaggagct tcactctggc ttcttctgag actggtgttg gagccccaat ctcaggaccg 961 ggaattccag gccggttcac caaggaggca gggacccttg cctactatga gatctgtgac 1021 ttcctccgcg gagccacagt ccatagaatc ctcggccagc aggtccccta tgccaccaag 1081 ggcaaccagt gggtaggata cgacgaccag gaaagcgtca aaagcaaggt gcagtacctg 1141 aaggacaggc agctggcggg cgccatggta tgggccctgg acctggatga cttccagggc 1201 tccttctgcg gccaggatct gcgcttccct ctcaccaatg ccatcaagga tgcactcgct 1261 gcaacgtagc cctctgttct gcacacagca cgggggccaa ggatgccccg tccccctctg 1321 gctccagctg gccgggagcc tgatcacctg ccctgctgag tcccaggctg agcctcagtc 1381 tccctccctt ggggcctatg cagaggtcca caacacacag atttgagctc agccctggtg 1441 ggcagagagg tagggatggg gctgtgggga tagtgaggca tcgcaatgta agactcggga 1501 ttagtacaca cttgttgatt aatggaaatg tttacagatc cccaagcctg gcaagggaat 1561 ttcttcaact ccctgccccc cagccctcct tatcaaagga caccattttg gcaagctcta 1621 tcaccaagga gccaaacatc ctacaagaca cagtgaccat actaattata ccccctgcaa 1681 agcccagctt gaaaccttca cttaggaacg taatcgtgtc ccctatccta cttccccttc 1741 ctaattccac agctgctcaa taaagtacaa gagcttaaaa aaaaaaaaaa aaaaaaaaaa 1801 a //