LOCUS BC008375 1702 bp mRNA linear HUM 13-JAN-2004
DEFINITION Homo sapiens SH3 domain containing, Ysc84-like 1 (S. cerevisiae),
mRNA (cDNA clone MGC:12275 IMAGE:3996120), complete cds.
ACCESSION BC008375
VERSION BC008375.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1702)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1702)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: g Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7661669.
FEATURES Location/Qualifiers
source 1..1702
/db_xref="H-InvDB:HIT000033751"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12275 IMAGE:3996120"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1702
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/db_xref="GeneID:26751"
CDS 41..1012
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/codon_start=1
/product="SH3YL1 protein"
/protein_id="AAH08375.1"
/db_xref="GeneID:26751"
/translation="MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKA
KGLAILSVIKAGFLVTARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLV
IILNYDRAVEAFAKGGNLTLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFA
GVSLEGSCLIERKETNRKFYCQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEG
QRINARKAAREQRKSSAKELPPKPLSRPQQSSAPVQLNSGSQSNLNQPIEVTALYSFE
GQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN"
misc_feature 332..682
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/note="DUF500; Region: Family of unknown function
(DUF500). Proteins in this family often also contain an
SH3 domain (pfam00018), or a FYVE zinc finger (pfam01363)"
/db_xref="CDD:pfam04366"
misc_feature 833..1003
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/note="SH3; Region: Src homology 3 domains"
/db_xref="CDD:smart00326"
BASE COUNT 555 a 308 c 353 g 486 t
ORIGIN
1 gggcatcctc gggacggggc gccgcggccg ggcgggcagc atgaataacc ctataccttc
61 caatttgaaa tcagaagcaa aaaaggctgc caaaatatta agagaattca cagaaataac
121 ttccagaaat ggacctgata agatcattcc tgctcacgta attgcgaagg ctaaaggcct
181 tgcaattctg tctgtgatca aagccgggtt cctggtgact gccagaggag gcagcgggat
241 tgtagtggcg cgccttccag atggaaaatg gtctgcaccc tcagccattg ggatagctgg
301 ccttggtgga ggatttgaga taggaattga ggtatcagac ttggtgataa ttctgaatta
361 tgaccgtgct gtagaagctt ttgcaaaagg cggaaatctg accctcggag ggaacttgac
421 tgtggcggtt gggcccttgg gaaggaactt ggaaggaaac gtggccctga gaagctccgc
481 tgccgtcttc acgtactgca agtcaagggg actctttgca ggcgtgtctt tagaagggag
541 ctgtttgatt gaaaggaaag aaactaatag aaaattttat tgtcaagata tccgagctta
601 tgacatttta tttggagata caccgcggcc tgctcaagcc gaagatcttt atgaaattct
661 tgattccttt actgaaaagt atgaaaatga aggacaacga atcaatgcaa gaaaagcagc
721 aagggagcag aggaagtctt ctgctaaaga attacctcca aagccattgt caagaccaca
781 gcagtcatct gcaccagtcc agctgaactc tggctctcaa agcaatttga atcaacccat
841 agaagtgaca gcgctgtatt catttgaagg acagcagcct ggggatttga attttcaagc
901 tggagacaga atcacagtta tatcaaaaac agattcacat tttgattggt gggaaggaaa
961 acttcgaggt caaactggca tttttccagc caactacgta accatgaatt aaagcgtata
1021 ctattttctt ctttgagaat tacaaaaaaa ttatttctac actgacagga tttactagtt
1081 aagcaatgtt taatataaat tttaaaaaac ttctgttcta caaaatttcc attccgtatg
1141 taaaagattt tgtttttcta tataaaaaga gctgactgac atatctttaa atactttgta
1201 ctaactttat cacacttact gtgtcataga atatcataca gtttatacgc tcatagttct
1261 cttgtgaaca cttcaaacat cgctaagcat ttgatctggc catgtatatg gtagctgtgt
1321 tttaatttga gaatcttgag ggtagagcca caaatttcaa ttcttacatt tccatttgca
1381 aagtgactag agaaaaagaa atcagcttaa atgaggtatt aagtaatgtt tagagttgta
1441 ggtattaact agaatataaa tccttagaaa ttgtctttat accttcaaaa attatactat
1501 gcatttatca tagaaatgtg attacaaaga agtctgacta ccatgtcttt aaacatatgg
1561 catctctcaa cttttcttcc ttatggggct acatttgttc atttccagca gtagcataaa
1621 cttacggtga catggtagac ttgtctctaa ataaaatttt taaatgttta ctaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa aa
//