LOCUS BC008374 1745 bp mRNA linear HUM 13-JAN-2004
DEFINITION Homo sapiens SH3 domain containing, Ysc84-like 1 (S. cerevisiae),
mRNA (cDNA clone MGC:12274 IMAGE:3996066), complete cds.
ACCESSION BC008374
VERSION BC008374.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1745)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1745)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: a Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7661669.
FEATURES Location/Qualifiers
source 1..1745
/db_xref="H-InvDB:HIT000033750"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12274 IMAGE:3996066"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1745
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/db_xref="GeneID:26751"
CDS 23..1051
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/codon_start=1
/product="SH3YL1 protein"
/protein_id="AAH08374.1"
/db_xref="GeneID:26751"
/translation="MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKA
KGLAILSVIKAGFLVTARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLV
IILNYDRAVEAFAKGGNLTLGGNLTVAVGPLGRNLEGNVALRSSAAVFTYCKSRGLFA
GVSLEGSCLIERKETNRKFYCQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEG
QRINARKAAREQRKSSAKELPPKPLSRPQQSSAPVQLNSGSQSNRNEYKLYPGLSSYH
ERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF
PANYVTMN"
misc_feature 314..664
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/note="DUF500; Region: Family of unknown function
(DUF500). Proteins in this family often also contain an
SH3 domain (pfam00018), or a FYVE zinc finger (pfam01363)"
/db_xref="CDD:pfam04366"
misc_feature 872..1042
/gene="SH3YL1"
/gene_synonym="DKFZP586F1318"
/gene_synonym="Ray"
/note="SH3; Region: Src homology 3 domains"
/db_xref="CDD:smart00326"
BASE COUNT 575 a 314 c 356 g 500 t
ORIGIN
1 gcgccgcggc cgggcgggca gcatgaataa ccctatacct tccaatttga aatcagaagc
61 aaaaaaggct gccaaaatat taagagaatt cacagaaata acttccagaa atggacctga
121 taagatcatt cctgctcacg taattgcgaa ggctaaaggc cttgcaattc tgtctgtgat
181 caaagccggg ttcctggtga ctgccagagg aggcagcggg attgtagtgg cgcgccttcc
241 agatggaaaa tggtctgcac cctcagccat tgggatagct ggccttggtg gaggatttga
301 aataggaatt gaggtatcag acttggtgat aattctgaat tatgaccgtg ctgtagaagc
361 ttttgcaaaa ggcggaaatc tgaccctcgg agggaacttg actgtggcgg ttgggccctt
421 gggaaggaac ttggaaggaa acgtggccct gagaagctcc gctgccgtct tcacgtactg
481 caagtcaagg ggactctttg caggcgtgtc tttagaaggg agctgtttga ttgaaaggaa
541 agaaactaat agaaaatttt attgtcaaga tatccgagct tatgacattt tatttggaga
601 tacaccgcgg cctgctcaag ccgaagatct ttatgaaatt cttgattcct ttactgaaaa
661 gtatgaaaat gaaggacaac gaatcaatgc aagaaaagca gcaagggagc agaggaagtc
721 ttctgctaaa gaattacctc caaagccatt gtcaagacca cagcagtcat ctgcaccagt
781 ccagctgaac tctggctctc aaagtaacag aaatgaatat aagctctatc ctggactttc
841 cagctatcat gagagagttg gcaatttgaa tcaacccata gaagtgacag cgctgtattc
901 atttgaagga cagcagcctg gggatttgaa ttttcaagct ggagacagaa tcacagttat
961 atcaaaaaca gattcacatt ttgattggtg ggaaggaaaa cttcgaggtc aaactggcat
1021 ttttccagcc aactacgtaa ccatgaatta aagcgtatac tattttcttc tttgagaatt
1081 acaaaaaaat tatttctaca ctgacaggat ttactagtta agcaatgttt aatataaatt
1141 ttaaaaaact tctgttctac aaaatttcca ttccgtatgt aaaagatttt gtttttctat
1201 ataaaaagag ctgactgaca tatctttaaa tactttgtac taactttatc acacttactg
1261 tgtcatagaa tatcatacag tttatacgct catagttctc ttgtgaacac ttcaaacatc
1321 gctaagcatt tgatctggcc atgtatatgg tagctgtgtt ttaatttgag aatcttgagg
1381 gtagagccac aaatttcaat tcttacattt ccatttgcaa agtgactaga gaaaaagaaa
1441 tcagcttaaa tgaggtatta agtaatgttt agagtcgtag gtattaacta gaatataaat
1501 ccttagaaat tgtctttata ccttcaaaaa ttatactatg catttatcat agaaatgtga
1561 ttacaaagaa gtctgactac catgtcttta aacatatggc atctctcaac ttttcttcct
1621 tatggggcta catttgttca tttccagcag tagcataaac ttacggtgac atggtagact
1681 tgtctctaaa taaaattttt aaatgtttac taagtaaaaa aaaaaaaaaa aaaaaaaaaa
1741 aaaaa
//