LOCUS BC008324 2455 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splA/ryanodine receptor domain and SOCS box containing
4, mRNA (cDNA clone MGC:15766 IMAGE:3501702), complete cds.
ACCESSION BC008324
VERSION BC008324.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2455)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2455)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: b Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18254459.
FEATURES Location/Qualifiers
source 1..2455
/db_xref="H-InvDB:HIT000033724"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15766 IMAGE:3501702"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2455
/gene="SPSB4"
/gene_synonym="SSB-4"
/gene_synonym="SSB4"
/db_xref="GeneID:92369"
/db_xref="HGNC:HGNC:30630"
CDS 255..1076
/gene="SPSB4"
/gene_synonym="SSB-4"
/gene_synonym="SSB4"
/codon_start=1
/product="splA/ryanodine receptor domain and SOCS box
containing 4"
/protein_id="AAH08324.1"
/db_xref="GeneID:92369"
/db_xref="HGNC:HGNC:30630"
/translation="MGQKLSGSLKSVEVREPALRPAKRELRGAEPGRPARLDQLLDMP
AAGLAVQLRHAWNPEDRSLNVFVKDDDRLTFHRHPVAQSTDGIRGKVGHARGLHAWQI
NWPARQRGTHAVVGVATARAPLHSVGYTALVGSDAESWGWDLGRSRLYHDGKNQPGVA
YPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLKGKKLYPVVSAVWG
HCEVTMRYINGLDPEPLPLMDLCRRSIRSALGRQRLQDISSLPLPQSLKNYLQYQ"
BASE COUNT 511 a 739 c 701 g 504 t
ORIGIN
1 ggagggggag gcggcggcgg cagcagaccc ctctccaggg agtccaggac ctgccagcgc
61 tggggattct tcccgaacag gcgcttgccc tctcttttat ggagcttggg cccctgccgc
121 agcccggtag aggctgtgga ggtctaccgt ccggaagcct ggttcccagc cccgtggccc
181 attcctggct acggggagtg gaggctccca cgaggtagcg gtggcctgca gcggcctcct
241 ccccgcagtg aagcatgggc cagaagctct cggggagcct caagtcagtg gaggtgcgag
301 agccggcgct gcggccggcc aagcgggagc tgcggggtgc agagcccggg cggccggcgc
361 ggctggacca gctgttggac atgccagcgg cggggctggc tgtgcagctg cggcacgcgt
421 ggaaccccga ggaccgctcg ctcaacgtct tcgtcaagga cgacgaccgg ctcaccttcc
481 accggcaccc cgtggcccag agcaccgacg gcatccgcgg caaggtgggc cacgcccgcg
541 gcctgcacgc ctggcagatc aactggccgg ctcggcagcg cggcacccac gctgtagttg
601 gtgtggccac ggcccgtgct cccctgcact ccgtgggcta cacggcgctg gtaggcagtg
661 acgccgagtc gtggggctgg gacctgggcc gcagccgcct ctaccacgac ggcaagaacc
721 agcccggcgt ggcctacccg gcctttctgg ggcccgacga ggcctttgcg ctgcccgact
781 cgctgctcgt ggtgctggac atggatgagg gcacactcag cttcatcgtg gatggccagt
841 acctgggcgt ggccttccga ggtctcaagg gcaagaagct gtacccggtg gtgagtgccg
901 tgtggggcca ctgtgaagtc accatgcgct acatcaacgg ccttgacccc gagcccctgc
961 cactgatgga cctgtgccgg agatccatcc gctcggccct gggccgccag cgcctgcagg
1021 acatcagctc cctgcccctg cctcagtctc tcaaaaacta tctgcagtac cagtgagcca
1081 agcctgatgg gcagcacaga cacagacaca caccgcaggg cccgaccctc ctgtcattca
1141 cagtcccatg gcacataggg gaaaggatct acccttctcc tggctcccca ggacactcag
1201 ttctttcaaa gaccaggatg tggtaccaac tttggaaacg aaaggtctct tgccaacagt
1261 atctactgcc ctcgaggcag ccctcccaag tcagacacct ccttcggagc cacagagagc
1321 ctggagtctg cacctcctgg aaatcctgcc accaaccagg acacagcagc caccgtattg
1381 atcagagagc ctgtttcctt attcaagaga atgaataaaa catttaggca ggagactttc
1441 tattgtgtgc cccgttgcag acagggccag ggagaaatta gccagtgcag ggggaaaatt
1501 gcctctgaat aatgaatgat gaaagcctga cgccgtgccc ctcctggccc atacgccttg
1561 ccagggcggc aggattgtca caccgtttta ggactctgtg ccactttgag agactgttcc
1621 caggaggccc aaccgcagac ctggcaagtg gacagtgcag tgtggagaca ccttccggct
1681 tacctctttg aacgttgttt acctacccct ttccacgtgc tccccttccc agccactgac
1741 tcacagttct ctggatgccc agacacctct cttcagggaa gatgagtctg actggtttgc
1801 cccagggaag agcgtatcct taccattatt ttaagtagca tttgcatttt aaaagaggaa
1861 tgcggagagg acagtactta gtccaaaggt gctaacgggg gaactggggg cattgtgaca
1921 cccaagtctg atgtgtcctg ggttgggggg ccttcctgga gtgtcagggt ctctgggcaa
1981 cgtccattca gggtgcggca tggctgtcac aaagctttat ttgagcaaat tattttttca
2041 ctttaggaga cttctacaag tttgtttcct gtttcaaatg tgtgtgtgat gtgctgttta
2101 tttatcagct tgaggtccat gggggcagcc ttgtgactgg aagggtggat atgggagaca
2161 cattctctac ctgctccgag cctggtcctc tcgcaggaat gctgctgctg cctccgccgc
2221 cactgctgct gccacctctt atatgtttca gacactctct gcccagactc atttttaact
2281 ggaaatcatc acagcagtgg gatatcagag ccccagacag cactgcctct tcctccccac
2341 cccactgccc ccaccttaat gtgaatttga ctgatgaatg aagagcgttt ctaataaagt
2401 ttgtcattca gtccttcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//