LOCUS       BC008317                2212 bp    mRNA    linear   HUM 04-NOV-2003
DEFINITION  Homo sapiens solute carrier family 39 (zinc transporter), member 6,
            mRNA (cDNA clone IMAGE:3343159), partial cds.
ACCESSION   BC008317
VERSION     BC008317.2
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Sep 16, 2003 this sequence version replaced BC008317.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
            Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
            Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
            Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
            Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
            Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
            Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
            George Yang, Scott Zuyderduyn, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 22 Row: k Column: 4.
FEATURES             Location/Qualifiers
     source          1..2212
                     /db_xref="H-InvDB:HIT000087031"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:3343159"
                     /tissue_type="Eye, retinoblastoma"
                     /clone_lib="NIH_MGC_16"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            <1..2212
                     /gene="SLC39A6"
                     /gene_synonym="LIV-1"
                     /db_xref="GeneID:25800"
     CDS             <1..1127
                     /gene="SLC39A6"
                     /gene_synonym="LIV-1"
                     /codon_start=3
                     /product="SLC39A6 protein"
                     /protein_id="AAH08317.2"
                     /db_xref="GeneID:25800"
                     /translation="HASHHHSHSHEEPAMEMKRGPLFSHLSSQNIEESAYFDSTWKGL
                     TALGGLYFMFLVEHVLTLIKQFKDKKKKNQKKPENDDDVEIKKQLSKYESQLSTNEEK
                     VDTDDRTEGYLRADSQEPSHFDSQQPAVLEEEEVMIAHAHPQEVYNEYVPRGCKNKCH
                     SHFHDTLGQSDDLIHHHHDYHHILHHHHHQNHHPHSHSQRYSREELKDAGVATLAWMV
                     IMGDGLHNFSDGLAIGAAFTEGLSSGLSTSVAVFCHELPHELGDFAVLLKAGMTVKQA
                     VLYNALSAMLAYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMVPEMLHNDAS
                     DHGCSRWGYFFLQNAGMLLGFGIMLLISIFEHKIVFRINF"
     misc_feature    63..371
                     /gene="SLC39A6"
                     /gene_synonym="LIV-1"
                     /note="Zip; Region: ZIP Zinc transporter. The ZIP family
                     consists of zinc transport proteins and many putative
                     metal transporters. The main contribution to this family
                     is from the Arabidopsis thaliana ZIP protein family these
                     proteins are responsible for zinc uptake in the plant.
                     Also found within this family are C. elegans proteins of
                     unknown function which are annotated as being similar to
                     human growth arrest inducible gene product, although this
                     protein in not found within this family"
                     /db_xref="CDD:pfam02535"
     misc_feature    594..1013
                     /gene="SLC39A6"
                     /gene_synonym="LIV-1"
                     /note="Zip; Region: ZIP Zinc transporter. The ZIP family
                     consists of zinc transport proteins and many putative
                     metal transporters. The main contribution to this family
                     is from the Arabidopsis thaliana ZIP protein family these
                     proteins are responsible for zinc uptake in the plant.
                     Also found within this family are C. elegans proteins of
                     unknown function which are annotated as being similar to
                     human growth arrest inducible gene product, although this
                     protein in not found within this family"
                     /db_xref="CDD:pfam02535"
BASE COUNT          700 a          367 c          449 g          696 t
ORIGIN      
        1 ctcatgcaag tcaccaccat agtcatagcc atgaagaacc agcaatggaa atgaaaagag
       61 gaccactttt cagtcatctg tcttctcaaa acatagaaga aagtgcctat tttgattcca
      121 cgtggaaggg tctaacagct ctaggaggcc tgtatttcat gtttcttgtt gaacatgtcc
      181 tcacattgat caaacaattt aaagataaga agaaaaagaa tcagaagaaa cctgaaaatg
      241 atgatgatgt ggagattaag aagcagttgt ccaagtatga atctcaactt tcaacaaatg
      301 aggagaaagt agatacagat gatcgaactg aaggctattt acgagcagac tcacaagagc
      361 cctcccactt tgattctcag cagcctgcag tcttggaaga agaagaggtc atgatagctc
      421 atgctcatcc acaggaagtc tacaatgaat atgtacccag agggtgcaag aataaatgcc
      481 attcacattt ccacgataca ctcggccagt cagacgatct cattcaccac catcatgact
      541 accatcatat tctccatcat caccaccacc aaaaccacca tcctcacagt cacagccagc
      601 gctactctcg ggaggagctg aaagatgccg gcgtcgccac tttggcctgg atggtgataa
      661 tgggtgatgg cctgcacaat ttcagcgatg gcctagcaat tggtgctgct tttactgaag
      721 gcttatcaag tggtttaagt acttctgttg ctgtgttctg tcatgagttg cctcatgaat
      781 taggtgactt tgctgttcta ctaaaggctg gcatgaccgt taagcaggct gtcctttata
      841 atgcattgtc agccatgctg gcgtatcttg gaatggcaac aggaattttc attggtcatt
      901 atgctgaaaa tgtttctatg tggatatttg cacttactgc tggcttattc atgtatgttg
      961 ctctggttga tatggtacct gaaatgctgc acaatgatgc tagtgaccat ggatgtagcc
     1021 gctgggggta tttcttttta cagaatgctg ggatgctttt gggttttgga attatgttac
     1081 ttatttccat atttgaacat aaaatcgtgt ttcgtataaa tttctagtta aggtttaaat
     1141 gctagagtag cttaaaaagt tgtcatagtt tcagtaggtc atagggagat gagtttgtat
     1201 gctgtactat gcagcgttta aagttagtgg gttttgtgat ttttgtattg aatattgctg
     1261 tctgttacaa agtcagttaa aggtacgttt taatatttaa gttattctat cttggagata
     1321 aaatctgtat gtgcaattca ccggtattac cagtttatta tgtaaacaag agatttggca
     1381 tgacatgttc tgtatgtttc agggaaaaat gtctttaatg ctttttcaag aactaacaca
     1441 gttattccta tactggattt taggtctctg aagaactgct ggtgtttagg aataagaatg
     1501 tgcatgaagc ctaaaatacc aagaaagctt atactgaatt taagcaaaga aataaaggag
     1561 aaaagagaag aatctgagaa ttggggaggc atagattctt ataaaaatca caaaatttgt
     1621 tgtaaattag aggggagaaa tttagaatta agtataaaaa ggcagaatta gtatagagta
     1681 cattcattaa acatttttgt caggattatt tcccgtaaaa acgtagtgag cacttttcat
     1741 atactaattt agttgtacat ttaactttgt ataatacaga aatctaaata tatttaatga
     1801 attcaagcaa tatatcactt gaccaagaaa ttggaatttc aaaatgttcg tgcgggtata
     1861 taccagatga gtacagtgag tagttttatg tatcaccaga ctgggttatt gccaagttat
     1921 atatcaccaa aagctgtatg actggatgtt ctggttacct ggtttacaaa attatcagag
     1981 tagtaaaact ttgatatata tgaggatatt aaaactacac taagtatcat ttgattcgat
     2041 tcagaaagta ctttgatatc tctcagtgct tcagtgctat cattgtgagc aattgtcttt
     2101 tatatacggt actgtagcca tactaggcct gtctgtggca ttctctagat gtttcttttt
     2161 tacacaataa attccttata tcagcttgaa aaaaaaaaaa aaaaaaaaaa aa
//