LOCUS BC008317 2212 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 6, mRNA (cDNA clone IMAGE:3343159), partial cds. ACCESSION BC008317 VERSION BC008317.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2212) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2212) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC008317.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 22 Row: k Column: 4. FEATURES Location/Qualifiers source 1..2212 /db_xref="H-InvDB:HIT000087031" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3343159" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2212 /gene="SLC39A6" /gene_synonym="LIV-1" /db_xref="GeneID:25800" CDS <1..1127 /gene="SLC39A6" /gene_synonym="LIV-1" /codon_start=3 /product="SLC39A6 protein" /protein_id="AAH08317.2" /db_xref="GeneID:25800" /translation="HASHHHSHSHEEPAMEMKRGPLFSHLSSQNIEESAYFDSTWKGL TALGGLYFMFLVEHVLTLIKQFKDKKKKNQKKPENDDDVEIKKQLSKYESQLSTNEEK VDTDDRTEGYLRADSQEPSHFDSQQPAVLEEEEVMIAHAHPQEVYNEYVPRGCKNKCH SHFHDTLGQSDDLIHHHHDYHHILHHHHHQNHHPHSHSQRYSREELKDAGVATLAWMV IMGDGLHNFSDGLAIGAAFTEGLSSGLSTSVAVFCHELPHELGDFAVLLKAGMTVKQA VLYNALSAMLAYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMVPEMLHNDAS DHGCSRWGYFFLQNAGMLLGFGIMLLISIFEHKIVFRINF" misc_feature 63..371 /gene="SLC39A6" /gene_synonym="LIV-1" /note="Zip; Region: ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family" /db_xref="CDD:pfam02535" misc_feature 594..1013 /gene="SLC39A6" /gene_synonym="LIV-1" /note="Zip; Region: ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family" /db_xref="CDD:pfam02535" BASE COUNT 700 a 367 c 449 g 696 t ORIGIN 1 ctcatgcaag tcaccaccat agtcatagcc atgaagaacc agcaatggaa atgaaaagag 61 gaccactttt cagtcatctg tcttctcaaa acatagaaga aagtgcctat tttgattcca 121 cgtggaaggg tctaacagct ctaggaggcc tgtatttcat gtttcttgtt gaacatgtcc 181 tcacattgat caaacaattt aaagataaga agaaaaagaa tcagaagaaa cctgaaaatg 241 atgatgatgt ggagattaag aagcagttgt ccaagtatga atctcaactt tcaacaaatg 301 aggagaaagt agatacagat gatcgaactg aaggctattt acgagcagac tcacaagagc 361 cctcccactt tgattctcag cagcctgcag tcttggaaga agaagaggtc atgatagctc 421 atgctcatcc acaggaagtc tacaatgaat atgtacccag agggtgcaag aataaatgcc 481 attcacattt ccacgataca ctcggccagt cagacgatct cattcaccac catcatgact 541 accatcatat tctccatcat caccaccacc aaaaccacca tcctcacagt cacagccagc 601 gctactctcg ggaggagctg aaagatgccg gcgtcgccac tttggcctgg atggtgataa 661 tgggtgatgg cctgcacaat ttcagcgatg gcctagcaat tggtgctgct tttactgaag 721 gcttatcaag tggtttaagt acttctgttg ctgtgttctg tcatgagttg cctcatgaat 781 taggtgactt tgctgttcta ctaaaggctg gcatgaccgt taagcaggct gtcctttata 841 atgcattgtc agccatgctg gcgtatcttg gaatggcaac aggaattttc attggtcatt 901 atgctgaaaa tgtttctatg tggatatttg cacttactgc tggcttattc atgtatgttg 961 ctctggttga tatggtacct gaaatgctgc acaatgatgc tagtgaccat ggatgtagcc 1021 gctgggggta tttcttttta cagaatgctg ggatgctttt gggttttgga attatgttac 1081 ttatttccat atttgaacat aaaatcgtgt ttcgtataaa tttctagtta aggtttaaat 1141 gctagagtag cttaaaaagt tgtcatagtt tcagtaggtc atagggagat gagtttgtat 1201 gctgtactat gcagcgttta aagttagtgg gttttgtgat ttttgtattg aatattgctg 1261 tctgttacaa agtcagttaa aggtacgttt taatatttaa gttattctat cttggagata 1321 aaatctgtat gtgcaattca ccggtattac cagtttatta tgtaaacaag agatttggca 1381 tgacatgttc tgtatgtttc agggaaaaat gtctttaatg ctttttcaag aactaacaca 1441 gttattccta tactggattt taggtctctg aagaactgct ggtgtttagg aataagaatg 1501 tgcatgaagc ctaaaatacc aagaaagctt atactgaatt taagcaaaga aataaaggag 1561 aaaagagaag aatctgagaa ttggggaggc atagattctt ataaaaatca caaaatttgt 1621 tgtaaattag aggggagaaa tttagaatta agtataaaaa ggcagaatta gtatagagta 1681 cattcattaa acatttttgt caggattatt tcccgtaaaa acgtagtgag cacttttcat 1741 atactaattt agttgtacat ttaactttgt ataatacaga aatctaaata tatttaatga 1801 attcaagcaa tatatcactt gaccaagaaa ttggaatttc aaaatgttcg tgcgggtata 1861 taccagatga gtacagtgag tagttttatg tatcaccaga ctgggttatt gccaagttat 1921 atatcaccaa aagctgtatg actggatgtt ctggttacct ggtttacaaa attatcagag 1981 tagtaaaact ttgatatata tgaggatatt aaaactacac taagtatcat ttgattcgat 2041 tcagaaagta ctttgatatc tctcagtgct tcagtgctat cattgtgagc aattgtcttt 2101 tatatacggt actgtagcca tactaggcct gtctgtggca ttctctagat gtttcttttt 2161 tacacaataa attccttata tcagcttgaa aaaaaaaaaa aaaaaaaaaa aa //