LOCUS BC008290 1207 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide A, mRNA
(cDNA clone MGC:12696 IMAGE:3677365), complete cds.
ACCESSION BC008290
VERSION BC008290.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1207)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: j Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39725715.
FEATURES Location/Qualifiers
source 1..1207
/db_xref="H-InvDB:HIT000033701"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12696 IMAGE:3677365"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1207
/gene="SNRPA"
/gene_synonym="U1A"
/db_xref="GeneID:6626"
/db_xref="HGNC:HGNC:11151"
/db_xref="MIM:182285"
CDS 120..968
/gene="SNRPA"
/gene_synonym="U1A"
/codon_start=1
/product="small nuclear ribonucleoprotein polypeptide A"
/protein_id="AAH08290.1"
/db_xref="GeneID:6626"
/db_xref="HGNC:HGNC:11151"
/db_xref="MIM:182285"
/translation="MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIL
VSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV
ERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ
PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEE
TNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMK
ISFAKK"
BASE COUNT 276 a 378 c 304 g 249 t
ORIGIN
1 ctgacttcct tttcggagga agatccttga gcagccgacg ttgggacaaa ggatttggag
61 aaacccaggg ctaaagtcac gtttttcctc ctttaagact tacctcaaca cttcactcca
121 tggcagttcc cgagacccgc cctaaccaca ctatttatat caacaacctc aatgagaaga
181 tcaagaagga tgagctaaaa aagtccctgt acgccatctt ctcccagttt ggccagatcc
241 tggatatcct ggtatcacgg agcctgaaga tgaggggcca ggcctttgtc atcttcaagg
301 aggtcagcag cgccaccaac gccctgcgct ccatgcaggg tttccctttc tatgacaaac
361 ctatgcgtat ccagtatgcc aagaccgact cagatatcat tgccaagatg aaaggcacct
421 tcgtggagcg ggaccgcaag cgggagaaga ggaagcccaa gagccaggag accccggcca
481 ccaagaaggc tgtgcaaggc gggggagcca cccccgtggt gggggctgtc caggggcctg
541 tcccgggcat gccgccgatg actcaggcgc cccgcattat gcaccacatg ccgggccagc
601 cgccctacat gccgccccct ggtatgatcc ccccgccagg ccttgcacct ggccagatcc
661 caccaggggc catgcccccg cagcagctta tgccaggaca gatgccccct gcccagcctc
721 tttctgagaa tccaccgaat cacatcttgt tcctcaccaa cctgccagag gagaccaacg
781 agctcatgct gtccatgctt ttcaatcagt tccctggctt caaggaggtc cgtctggtac
841 ccgggcggca tgacatcgcc ttcgtggagt ttgacaatga ggtacaggca ggggcagctc
901 gcgatgccct gcagggcttt aagatcacgc agaacaacgc catgaagatc tcctttgcca
961 agaagtagca ccttttcccc ccatgcctgc cccttcccct gttctggggc cacccctttc
1021 ccccttggct cagccccctg aaggtaagtc cccccttggg ggccttcttg gagccgtgtg
1081 tgagtgagtg gtcgccacac agcattgtac ccagagtctg tccccagaca ttgcacctgg
1141 cgctgttagg ccggaattaa agtggctttt tgaggtttgg tttttcacaa aaaaaaaaaa
1201 aaaaaaa
//