LOCUS BC008235 1844 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ring finger protein 146, mRNA (cDNA clone MGC:9892
IMAGE:3868592), complete cds.
ACCESSION BC008235
VERSION BC008235.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1844)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1844)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33636757.
FEATURES Location/Qualifiers
source 1..1844
/db_xref="H-InvDB:HIT000033685"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9892 IMAGE:3868592"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1844
/gene="RNF146"
/gene_synonym="dJ351K20.1"
/gene_synonym="DKFZP434O1427"
/gene_synonym="RP3-351K20.1"
/db_xref="GeneID:81847"
/db_xref="HGNC:HGNC:21336"
CDS 89..1165
/gene="RNF146"
/gene_synonym="dJ351K20.1"
/gene_synonym="DKFZP434O1427"
/gene_synonym="RP3-351K20.1"
/codon_start=1
/product="ring finger protein 146"
/protein_id="AAH08235.1"
/db_xref="GeneID:81847"
/db_xref="HGNC:HGNC:21336"
/translation="MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCV
HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAASRGNGE
YAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHG
RRRKIKRDIIDIPKKGVAGLRLDCDANTVNLARESSADGADSVSAQSGASVQPLVSSV
RPLTSVDGQLTSPATPSPDASTSLEDSFAHLQLSGDNTAERSHRGEGEEDHESPSSGR
VPAPDTSIEETESDASSDSEDVSAVVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSV
AGGGTVSVSVRSRRPDGQCTVTEV"
BASE COUNT 554 a 321 c 416 g 553 t
ORIGIN
1 atgattgtta cctttatgaa gctttagtga ttacaaagca ctttttttgt ccatttttac
61 ctgagctttg taaactctga tttgcaggat ggctggctgt ggtgaaattg atcattcaat
121 aaacatgctt cctacaaaca ggaaagcgaa cgagtcctgt tctaatactg caccttcttt
181 aaccgtccct gaatgtgcca tttgtctgca aacatgtgtt catccagtca gtctgccctg
241 taagcacgtt ttctgctatc tatgtgtaaa aggagcttca tggcttggaa agcggtgtgc
301 tctttgtcga caagaaattc ccgaggattt ccttgacaag ccaaccttgt tgtcaccaga
361 agaactcaag gcagcaagta gaggaaatgg tgaatatgca tggtattatg aaggaagaaa
421 tgggtggtgg cagtacgatg agcgcactag tagagagctg gaagatgctt tttccaaagg
481 taaaaagaac actgaaatgt taattgctgg ctttctgtat gtcgctgatc ttgaaaacat
541 ggttcaatat aggagaaatg aacatggacg tcgcaggaag attaagcgag atataataga
601 tataccaaag aagggagtag ctggacttag gctagactgt gatgctaata ccgtaaacct
661 agcaagagag agctctgctg acggagcgga cagtgtatca gcacagagtg gagcttctgt
721 tcagccccta gtgtcttctg taaggcccct aacatcagta gatggtcagt taacaagccc
781 tgcaacacca tcccctgatg caagcacttc tctggaagac tcttttgctc atttacaact
841 cagtggagac aacacagctg aaaggagtca taggggagaa ggagaagaag atcatgaatc
901 accatcttca ggcagggtac cagcaccaga cacctccatt gaagaaactg aatcagatgc
961 cagtagtgat agtgaggatg tatctgcagt tgttgcacag cactccttga cccaacagag
1021 acttttggtt tctaatgcaa accagacagt acccgatcga tcagatcgat cgggaactga
1081 tcgatcagta gcagggggtg gaacagtgag tgtcagtgtc agatctagaa ggcctgatgg
1141 acagtgcaca gtaactgaag tttaaataaa aatgtcttca gctccatgct caaggttgaa
1201 agggttacct gtaaatttct gcccacataa cattatactc atccctagta gtgcattttg
1261 ggagttgggg tgggaagggg tatgggaagg atagactcat aattaaaatg tctaacatgt
1321 ctctgttgag aaatttattt aatgtaagga acttgggtgt taatagttga gagctgttta
1381 gtaataaccc agttttcttg aggtctgttt actttatact ttttaaaaac ttctgtagtt
1441 cttttggcca gtgtgtttgt attatctgtg cattaatggt cctcatctga ctcctgcatt
1501 gtgtcttatt tttctgcatg gattggcata agaccattac taaaatttgg cacctgtgag
1561 atgtttgata ttatgaacag gaaacataat ttaatgtatg aatagatgtg aatttgggat
1621 ttcaaaatag atgaataaca actattttat agtaaagtta ttgaaatgga aatgaaaaca
1681 gccagtaact tatgtttcag aatgtttgta acacacttca tggtgttccc ataggctttg
1741 ctgtctagtc ttatagtttg aggttttttt ggtctgcatt tttctttttg attacaaaat
1801 ttataattta ataaatacta gagtttatca aaaaaaaaaa aaaa
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