LOCUS BC008203 1428 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens transmembrane protein 187, mRNA (cDNA clone MGC:17711
IMAGE:3868838), complete cds.
ACCESSION BC008203
VERSION BC008203.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1428)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1428)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: i Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504738.
FEATURES Location/Qualifiers
source 1..1428
/db_xref="H-InvDB:HIT000033674"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17711 IMAGE:3868838"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1428
/gene="TMEM187"
/gene_synonym="DXS9878E"
/gene_synonym="ITBA1"
/db_xref="GeneID:8269"
/db_xref="HGNC:HGNC:13705"
/db_xref="MIM:300059"
CDS 283..1068
/gene="TMEM187"
/gene_synonym="DXS9878E"
/gene_synonym="ITBA1"
/codon_start=1
/product="transmembrane protein 187"
/protein_id="AAH08203.1"
/db_xref="GeneID:8269"
/db_xref="HGNC:HGNC:13705"
/db_xref="MIM:300059"
/translation="MNPEWGQAFVHVAVAGGLCAVAVFTGIFDSVSVQVGYEHYAEAP
VAGLPAFLAMPFNSLVNMAYTLLGLSWLHRGGAMGLGPRYLKDVFAAMALLYGPVQWL
RLWTQWRRAAVLDQWLTLPIFAWPVAWCLYLDRGWRPWLFLSLECVSLASYGLALLHP
QGFEVALGAHVVAAVGQALRTHRHYGSTTSATYLALGVLSCLGFVVLKLCDHQLARWR
LFQCLTGHFWSKVCDVLQFHFAFLFLTHFNTHPRFHPSGGKTR"
BASE COUNT 261 a 415 c 422 g 330 t
ORIGIN
1 atttccccca gcgaggcgag tgaggcgaaa tacccgtatg gtgatagctg gccttttcgc
61 gccaatactg aaaaaggcag aacgttcctc cgctggcgcc agccaatcag caggactcct
121 gccttccttc ggggcaaggt cgcagcatct gcctcggaaa tcacgaaatc acggggcttc
181 tttctgctgg ctcagccggg aggcccagag tgttctgcag aggctgcgta ttgaaggctg
241 ctctctgaag ctccctgccc caggtcacgc cgccggttcc agatgaatcc agagtggggg
301 caggccttcg tgcacgtggc cgtggccggt ggcctctgtg ccgtggctgt gttcacgggc
361 attttcgaca gtgtttccgt gcaagtgggc tatgagcact acgccgaggc gcccgtggcc
421 ggcctccctg ccttcctggc catgccgttc aactcactcg tgaacatggc ctacacgctg
481 ctggggctgt cgtggctgca caggggcggc gcgatggggc tgggtccccg ctacctgaag
541 gacgtgttcg cagccatggc cctgctctat ggccccgtgc agtggctgcg cctgtggacg
601 cagtggcgcc gtgccgcggt gctggaccag tggctcacac tgcccatctt tgcatggccc
661 gtggcctggt gcctctacct agaccgcggc tggcggccct ggctgttcct ctctcttgag
721 tgcgtctccc tggccagtta tggcctcgct ctgctgcatc cccagggctt cgaggtcgca
781 ctgggtgctc acgtggtggc cgctgtgggg caggcgctgc gcacccacag gcactatggc
841 agcaccacct cggctaccta cttagctttg ggggtgctct cttgcctggg ctttgtggtc
901 ctcaagctgt gtgaccatca gctcgcacgg tggcgtctct tccagtgcct cacaggccac
961 ttctggtcca aggtctgtga cgtgctccag ttccactttg cgtttttgtt tctgacgcat
1021 ttcaacactc acccaagatt ccatccctct ggcgggaaga cgcgttgaac ccagggaaga
1081 acctgctgaa aaccgatgac ccccagcatt gaaatggact ctgagatggc agcgtggtgc
1141 cagtgtcaga catcctgtgt gtgatgatat gcactgatca cacaagactg ccctttcctg
1201 agaagctgcg ggcttcggtg tggaggggtg gagtgctgtg atctcgacaa cttactttca
1261 aagacataaa gcacagatct ccgcacaggg gatgtgtgtg ttcctgatgt aatttgcata
1321 acttttctgt agtttgaaat gtttccaaat aaatattggc aaggggagtg gaaatgacac
1381 caagaagccc ctcatgctca tggttggaca gagaaaaaaa aaaaaaaa
//