LOCUS BC007963 1060 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens major histocompatibility complex, class II, DP beta 1, mRNA (cDNA clone MGC:14112 IMAGE:4309717), complete cds. ACCESSION BC007963 VERSION BC007963.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1060) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1060) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 9, 2003 this sequence version replaced BC007963.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 20 Row: p Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24797075. FEATURES Location/Qualifiers source 1..1060 /db_xref="H-InvDB:HIT000033558_04" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:14112 IMAGE:4309717" /tissue_type="Primary B-Cells from Tonsils" /clone_lib="NIH_MGC_48" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1060 /gene="HLA-DPB1" /gene_synonym="DPB1" /gene_synonym="MHC DPB1" /db_xref="GeneID:3115" /db_xref="HGNC:HGNC:4940" /db_xref="MIM:142858" CDS 34..810 /gene="HLA-DPB1" /gene_synonym="DPB1" /gene_synonym="MHC DPB1" /codon_start=1 /product="major histocompatibility complex, class II, DP beta 1" /protein_id="AAH07963.1" /db_xref="GeneID:3115" /db_xref="HGNC:HGNC:4940" /db_xref="MIM:142858" /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQEC YAFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVP DRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFL NGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQ SDSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" BASE COUNT 250 a 278 c 296 g 236 t ORIGIN 1 gctcttttca ttttgccatc cttttccagc tccatgatgg ttctgcaggt ttctgcggcc 61 ccccggacag tggctctgac ggcgttactg atggtgctgc tcacatctgt ggtccagggc 121 agggccactc cagagaatta ccttttccag ggacggcagg aatgctacgc gtttaatggg 181 acacagcgct tcctggagag atacatctac aaccgggagg agttcgtgcg cttcgacagc 241 gacgtggggg agttccgggc ggtgacggag ctggggcggc ctgctgcgga gtactggaac 301 agccagaagg acatcctgga ggagaagcgg gcagtgccgg acaggatgtg cagacacaac 361 tacgagctgg gcgggcccat gaccctgcag cgccgagtcc agcctagggt gaatgtttcc 421 ccctccaaga aggggccctt gcagcaccac aacctgcttg tctgccacgt gacggatttc 481 tacccaggca gcattcaagt ccgatggttc ctgaatggac aggaggaaac agctggggtc 541 gtgtccacca acctgatccg taatggagac tggaccttcc agatcctggt gatgctggaa 601 atgacccccc agcagggaga tgtctacacc tgccaagtgg agcacaccag cctggatagt 661 cctgtcaccg tggagtggaa ggcacagtct gattctgccc ggagtaagac attgacggga 721 gctgggggct tcgtgctggg gctcatcatc tgtggagtgg gcatcttcat gcacaggagg 781 agcaagaaag ttcaacgagg atctgcataa acagggttcc tgagctcact gaaaagacta 841 ttgtgcctta ggaaaagcat ttgctgtgtt tcgttagcat ctggctccag gacagacctt 901 caacttccaa attggatact gctgccaaga agttgctctg aagtcagttt ctatcattct 961 gctctttgat tcaaagcact gtttctctca ctgggcctcc aaccatgttc ccttcttctt 1021 agcaccacaa ataatcaaaa cccaaaaaaa aaaaaaaaaa //