LOCUS BC007951 2214 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens SRY (sex determining region Y)-box 9, mRNA (cDNA clone
MGC:14364 IMAGE:4299305), complete cds.
ACCESSION BC007951
VERSION BC007951.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2214)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2214)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC007951.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: l Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37704387.
FEATURES Location/Qualifiers
source 1..2214
/db_xref="H-InvDB:HIT000033552"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14364 IMAGE:4299305"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2214
/gene="SOX9"
/gene_synonym="SRA1"
/db_xref="GeneID:6662"
/db_xref="HGNC:HGNC:11204"
/db_xref="MIM:608160"
CDS 230..1759
/gene="SOX9"
/gene_synonym="SRA1"
/codon_start=1
/product="SRY (sex determining region Y)-box 9"
/protein_id="AAH07951.1"
/db_xref="GeneID:6662"
/db_xref="HGNC:HGNC:11204"
/db_xref="MIM:608160"
/translation="MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTE
NTRPQENTFPKGEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNK
PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAER
LRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGM
SEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIG
ELSSDVISNIETFDVNEFDQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHV
WMSKQQAPPPPPQQPPQAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQS
QRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSS
YYSHAAGQGTGLYSTFTYMNPAQRPMYTPIADTSGVPSIPQTHSPQHWEQPVYTQLTR
P"
BASE COUNT 498 a 791 c 594 g 331 t
ORIGIN
1 ctcctcctct ccaattcgcc tccccccact tggagcgggc agctgtgaac tggccacccc
61 gcgccttcct aagtgctcgc cgcggtagcc ggccgacgcg ccagcttccc cgggagccgc
121 ttgctccgca tccgggcagc cgaggggaga ggagcccgcg cctcgagtcc ccgagccgcc
181 gcggcttctc gcctttcccg gccaccagcc ccctgccccg ggcccgcgta tgaatctcct
241 ggaccccttc atgaagatga ccgacgagca ggagaagggc ctgtccggcg cccccagccc
301 caccatgtcc gaggactccg cgggctcgcc ctgcccgtcg ggctccggct cggacaccga
361 gaacacgcgg ccccaggaga acacgttccc caagggcgag cccgatctga agaaggagag
421 cgaggaggac aagttccccg tgtgcatccg cgaggcggtc agccaggtgc tcaaaggcta
481 cgactggacg ctggtgccca tgccggtgcg cgtcaacggc tccagcaaga acaagccgca
541 cgtcaagcgg cccatgaacg ccttcatggt gtgggcgcag gcggcgcgca ggaagctcgc
601 ggaccagtac ccgcacttgc acaacgccga gctcagcaag acgctgggca agctctggag
661 acttctgaac gagagcgaga agcggccctt cgtggaggag gcggagcggc tgcgcgtgca
721 gcacaagaag gaccacccgg attacaagta ccagccgcgg cggaggaagt cggtgaagaa
781 cgggcaggcg gaggcagagg aggccacgga gcagacgcac atctccccca acgccatctt
841 caaggcgctg caggccgact cgccacactc ctcctccggc atgagcgagg tgcactcccc
901 cggcgagcac tcggggcaat cccagggccc accgacccca cccaccaccc ccaaaaccga
961 cgtgcagccg ggcaaggctg acctgaagcg agaggggcgc cccttgccag aggggggcag
1021 acagccccct atcgacttcc gcgacgtgga catcggcgag ctgagcagcg acgtcatctc
1081 caacatcgag accttcgatg tcaacgagtt tgaccagtac ctgccgccca acggccaccc
1141 gggggtgccg gccacgcacg gccaggtcac ctacacgggc agctacggca tcagcagcac
1201 cgcggccacc ccggcgagcg cgggccacgt gtggatgtcc aagcagcagg cgccgccgcc
1261 acccccgcag cagcccccac aggccccgcc ggccccgcag gcgcccccgc agccgcaggc
1321 ggcgccccca cagcagccgg cggcaccccc gcagcagcca caggcgcaca cgctgaccac
1381 gctgagcagc gagccgggcc agtcccagcg aacgcacatc aagacggagc agctgagccc
1441 cagccactac agcgagcagc agcagcactc gccccaacag atcgcctaca gccccttcaa
1501 cctcccacac tacagcccct cctacccgcc catcacccgc tcacagtacg actacaccga
1561 ccaccagaac tccagctcct actacagcca cgcggcaggc cagggcaccg gcctctactc
1621 caccttcacc tacatgaacc ccgctcagcg ccccatgtac acccccatcg ccgacacctc
1681 tggggtccct tccatcccgc agacccacag cccccagcac tgggaacaac ccgtctacac
1741 acagctcact cgaccttgag gaggcctccc acgaagggcg aagatggccg agatgatcct
1801 aaaaataacc gaagaaagag aggaccaacc agaattccct ttggacattt gtgttttttt
1861 gtttttttat tttgttttgt tttttcttct tcttcttctt ccttaaagac atttaagcta
1921 aaggcaactc gtacccaaat ttccaagaca caaacatgac ctatccaagc gcattaccca
1981 cttgtggcca atcagtggcc aggccaacct tggctaaatg gagcagcgaa atcaacgaga
2041 aactggactt tttaaaccct cttcagagca agcgtggagg atgatggaga atcgtgtgat
2101 cagtgtgcta aatctctctg cctgtttgga ctttgtaatt atttttttag cagtaattaa
2161 agaaaaaagt cctctgtgag gaatattctc tattttaaaa aaaaaaaaaa aaaa
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