LOCUS BC007911 1920 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calreticulin, mRNA (cDNA clone MGC:14363
IMAGE:4299303), complete cds.
ACCESSION BC007911
VERSION BC007911.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1920)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1920)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: l Column: 13.
FEATURES Location/Qualifiers
source 1..1920
/db_xref="H-InvDB:HIT000033527"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14363 IMAGE:4299303"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1920
/gene="CALR"
/gene_synonym="cC1qR"
/gene_synonym="RO"
/gene_synonym="SSA"
/db_xref="GeneID:811"
/db_xref="HGNC:HGNC:1455"
/db_xref="MIM:109091"
CDS 71..1324
/gene="CALR"
/gene_synonym="cC1qR"
/gene_synonym="RO"
/gene_synonym="SSA"
/codon_start=1
/product="calreticulin"
/protein_id="AAH07911.1"
/db_xref="GeneID:811"
/db_xref="HGNC:HGNC:1455"
/db_xref="MIM:109091"
/translation="MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKS
DFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQN
IDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKD
IRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED
WDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWK
PRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITN
DEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKD
EDEEDEEDKEEDEEEDVPGQAKDEL"
BASE COUNT 483 a 499 c 526 g 412 t
ORIGIN
1 gcacgagggc agagccgctg ccggagggtc gttttaaagg gcccgcgcgt tgccgccccc
61 tcggcccgcc atgctgctat ccgtgccgct gctgctcggc ctcctcggcc tggccgtcgc
121 cgagcctgcc gtctacttca aggagcagtt tctggacgga gacgggtgga cttcccgctg
181 gatcgaatcc aaacacaagt cagattttgg caaattcgtt ctcagttccg gcaagttcta
241 cggtgacgag gagaaagata aaggtttgca gacaagccag gatgcacgct tttatgctct
301 gtcggccagt ttcgagcctt tcagcaacaa aggccagacg ctggtggtgc agttcacggt
361 gaaacatgag cagaacatcg actgtggggg cggctatgtg aagctgtttc ctaatagttt
421 ggaccagaca gacatgcacg gagactcaga atacaacatc atgtttggtc ccgacatctg
481 tggccctggc accaagaagg ttcatgtcat cttcaactac aagggcaaga acgtgctgat
541 caacaaggac atccgttgca aggatgatga gtttacacac ctgtacacac tgattgtgcg
601 gccagacaac acctatgagg tgaagattga caacagccag gtggagtccg gctccttgga
661 agacgattgg gacttcctgc cacccaagaa gataaaggat cctgatgctt caaaaccgga
721 agactgggat gagcgggcca agatcgatga tcccacagac tccaagcctg aggactggga
781 caagcccgag catatccctg accctgatgc taagaagccc gaggactggg atgaagagat
841 ggacggagag tgggaacccc cagtgattca gaaccctgag tacaagggtg agtggaagcc
901 ccggcagatc gacaacccag attacaaggg cacttggatc cacccagaaa ttgacaaccc
961 cgagtattct cccgatccca gtatctatgc ctatgataac tttggcgtgc tgggcctgga
1021 cctctggcag gtcaagtctg gcaccatctt tgacaacttc ctcatcacca acgatgaggc
1081 atacgctgag gagtttggca acgagacgtg gggcgtaaca aaggcagcag agaaacaaat
1141 gaaggacaaa caggacgagg agcagaggct taaggaggag gaagaagaca agaaacgcaa
1201 agaggaggag gaggcagagg acaaggagga tgatgaggac aaagatgagg atgaggagga
1261 tgaggaggac aaggaggaag atgaggagga agatgtcccc ggccaggcca aggacgagct
1321 gtagagaggc ctgcctccag ggctggactg aggcctgagc gctcctgccg cagagctggc
1381 cgcgccaaat aatgtctctg tgagactcga gaactttcat ttttttccag gctggttcgg
1441 atttggggtg gattttggtt ttgttcccct cctccactct cccccacccc ctccccgccc
1501 tttttttttt ttttttttta aactggtatt ttatctttga ttctccttca gccctcaccc
1561 ctggttctca tctttcttga tcaacatctt ttcttgcctc tgtccccttc tctcatctct
1621 tagctcccct ccaacctggg gggcagtggt gtggagaagc cacaggcctg agatttcatc
1681 tgctctcctt cctggagccc agaggagggc agcagaaggg ggtggtgtct ccaacccccc
1741 agcactgagg aagaacgggg ctcttctcat ttcacccctc cctttctccc ctgcccccag
1801 gactgggcca cttctgggtg gggcagtggg tcccagattg gctcacactg agaatgtaag
1861 aactacaaac aaaatttcta ttaaattaaa ttttgtgtct ccaaaaaaaa aaaaaaaaaa
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