LOCUS BC007910 1695 bp mRNA linear HUM 15-SEP-2004
DEFINITION Homo sapiens SPOC domain containing 1, mRNA (cDNA clone
IMAGE:4299322), partial cds.
ACCESSION BC007910
VERSION BC007910.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1695)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1695)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC007910.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1695
/db_xref="H-InvDB:HIT000086952"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4299322"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1695
/gene="SPOCD1"
/gene_synonym="FLJ25348"
/db_xref="GeneID:90853"
CDS <1..1031
/gene="SPOCD1"
/gene_synonym="FLJ25348"
/codon_start=3
/product="SPOCD1 protein"
/protein_id="AAH07910.2"
/db_xref="GeneID:90853"
/translation="GTKCLESLLGSVPPPCPGLHSLRELPDPVLSEEVVEGIAAGIEA
ALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQLAPQE
LARWRDQEEKRGLNIIEQQQKEPCRLPASKMTHKGEVEIQRDMDQTLTLEDLGPQMFM
DCSPQALPIASEDTTGQHDHHFLDPNCHICKDWEPSNELLGSFEAAKSCGDNIFQKAL
SQTPMPPWEGVLDMFSIKRFRARAQLVSGHSCRLVQALPTVIRSAGCIPSNIVWDLLA
SICPAKAKVWRSLTQVCCWLCCSPRKGFQTQQGPAPGWGRFKRWSPSTVRWRRDTISQ
MTGGRMCP"
BASE COUNT 371 a 528 c 481 g 315 t
ORIGIN
1 ctgggactaa gtgcctggag agcctcctgg gctcagtgcc cccgccctgc cctggcctcc
61 acagccttcg ggagctccca gacccagtgc tgagtgagga ggtggtggag ggcattgctg
121 ctggcattga ggcagccctc tgggacctga cacaaggcac caatggccgg tacaagacca
181 agtatcgcag cctgctgttc aacctgcggg accccaggaa cctggacttg tttctcaaag
241 tggttcatgg agatgtcacc ccctacgacc tggtgcggat gagctcgatg cagctggccc
301 cccaggagct ggcccgctgg cgggaccagg aggagaaaag gggcctgaat atcattgagc
361 agcaacagaa ggagccgtgc agacttccag cctccaaaat gacccacaag ggcgaagtgg
421 agattcagcg ggacatggac cagacactga ccctggagga tctgggaccg cagatgttca
481 tggactgcag cccacaggcc ctgcccatcg catcagagga caccacgggg cagcatgacc
541 accacttctt agaccccaac tgccacatct gcaaggactg ggagccctcg aatgagctgc
601 taggctcctt cgaagccgcc aagagctgcg gggacaatat cttccagaaa gccctaagcc
661 aaactcctat gccaccctgg gaaggtgttc tggacatgtt ctccatcaag cggttccggg
721 ccagggccca gctggtctcg ggacacagct gtcggcttgt ccaggctctg cccaccgtga
781 tccgctcggc aggctgcatc ccctccaaca ttgtctggga ccttctggcc agcatctgcc
841 cagccaaggc caaggtctgg aggtcactca ctcaagtctg ttgctggctg tgctgctccc
901 caaggaaggg cttccagaca cagcagggtc cagcccctgg ttggggaagg ttcaaaagat
961 ggtctccttc aacagtaagg tggagaagag atactatcag ccagatgaca ggaggccgaa
1021 tgtgcccctg aagggcaccc ctcccccagg aggtgcctgg cagcagagcc agggcagggg
1081 cagtatagct ccaaggggaa tctctgcttg gcagaggccc cccagaggca gggggaggct
1141 ctggccagag cctgaaaact ggcagcatcc tgggcgaggg cagtggcccc cagagccagg
1201 cttgcgccag tcccagcatc cctattcagt agcaccagct ggtcatggct ttggccgtgg
1261 ccagcacttc cacagggact cctgtcccca ccaagccctg ctccggcacc tcgaatccct
1321 ggcgaccatg agtcaccagc tccaagcctt actgtgcccc cagaccaaga gctccatccc
1381 ccgccctctg cagcgtttgt ctagcgccct tgcagctcca gagccccctg gcccagcccg
1441 tgactcctct ttggggccta cagatgaagc tggctctgag tgtcccttcc ctagaaaggc
1501 ctgaccctcc ttacccacca gaacaggggt tttgatgccc tcactagtgt tgaagcctgt
1561 tccagagaga ggtgggactg caaggagagg atggtcagcc ctacccacct gccctgtttg
1621 agcttcctgt ttgacaatgt ttgctgttga ttttttgttc aataaagaat ttggtaaaaa
1681 aaaaaaaaaa aaaaa
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