LOCUS BC007873 1269 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PDGFA associated protein 1, mRNA (cDNA clone MGC:14445
IMAGE:4303959), complete cds.
ACCESSION BC007873
VERSION BC007873.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1269)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1269)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007873.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: o Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1269
/db_xref="H-InvDB:HIT000033506"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14445 IMAGE:4303959"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1269
/gene="PDAP1"
/gene_synonym="HASPP28"
/gene_synonym="PAP"
/gene_synonym="PAP1"
/db_xref="GeneID:11333"
/db_xref="HGNC:HGNC:14634"
/db_xref="MIM:607075"
CDS 11..556
/gene="PDAP1"
/gene_synonym="HASPP28"
/gene_synonym="PAP"
/gene_synonym="PAP1"
/codon_start=1
/product="PDGFA associated protein 1"
/protein_id="AAH07873.1"
/db_xref="GeneID:11333"
/db_xref="HGNC:HGNC:14634"
/db_xref="MIM:607075"
/translation="MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGG
DGAAGDPKKEKKSLDSDESEDEEDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLD
GPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAIIRKQREEAARKKEEE
RKAKDDATLSGKRMQSLSLNK"
BASE COUNT 345 a 302 c 386 g 236 t
ORIGIN
1 cggagccgca atgcctaaag gaggaagaaa gggaggccac aaaggccggg cgaggcagta
61 tacaagccct gaggagatcg acgcgcagct gcaggctgag aagcagaagg ccagggaaga
121 agaggagcaa aaagaaggtg gagatggggc tgcaggtgac cccaaaaagg agaagaaatc
181 tctagactca gatgagagtg aggatgaaga agatgactac cagcaaaagc gcaaaggcgt
241 tgaagggctc atcgacatcg agaaccccaa ccgggtggca cagacaacca aaaaggtcac
301 acaactggat ctggacgggc caaaggagct ttcgaggaga gaacgagaag agattgagaa
361 gcagaaggca aaagagcgtt acatgaaaat gcacttggcc gggaagacag agcaagccaa
421 ggctgacctg gcccggctgg ccatcatccg gaaacagcgg gaggaggctg cccggaagaa
481 ggaagaggaa aggaaagcaa aagacgatgc cacattgtca ggaaaacgaa tgcagtcact
541 ctccctgaat aagtaactgc gacccgtggg aggagatgcc ggggacctgg gccgcgctgc
601 caggacctct gctgtgtctc gcccaccctg tgccctggcg ccgctgcaac agcccctcat
661 ggccaggagc cccccatggc ctggggcctc ctcttcatct tggcacagaa attgtttggg
721 ggatgggggg ggggactggg ggaggggtag ctgctatctt tgagacagaa agatgcagga
781 cagcatttca tatgtaacca tttgaatgtt tttgctgttt ttagaattca gagcccttgc
841 tggggggtgc ctgggagatg gggtaagaag agctttcatt tgtctggtag atagatagca
901 tgtaaggggg tggttgtccc aggaggcagc tgctgacagg tttgctacac acagccccgg
961 actgtgttgc ctgggtgctc attcagagag gggctatcat ctgggagcct gtgcccctgg
1021 gtcctcgagg gtcatggctt gtccctggtc agtcctgtct gactgacctc agggcctcac
1081 ctctctgccc ttccctgccc ggttcctact cacctggcta gggccagtgc ccattttcag
1141 ccctacccat tgatcatttc aagaaacctc tgtttactgt gtggcaccca ggcaaaacat
1201 gctccacaaa ttcaacttgt atatttggca gattaaactt gacattatcg taaaaaaaaa
1261 aaaaaaaaa
//