LOCUS BC007831 1150 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens phosphodiesterase 6D, cGMP-specific, rod, delta, mRNA
(cDNA clone MGC:14096 IMAGE:3638562), complete cds.
ACCESSION BC007831
VERSION BC007831.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1150)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1150)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007831.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: a Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56676309.
FEATURES Location/Qualifiers
source 1..1150
/db_xref="H-InvDB:HIT000033477"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14096 IMAGE:3638562"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1150
/gene="PDE6D"
/gene_synonym="PDED"
/db_xref="GeneID:5147"
/db_xref="HGNC:HGNC:8788"
/db_xref="MIM:602676"
CDS 150..602
/gene="PDE6D"
/gene_synonym="PDED"
/codon_start=1
/product="phosphodiesterase 6D, cGMP-specific, rod, delta"
/protein_id="AAH07831.1"
/db_xref="GeneID:5147"
/db_xref="HGNC:HGNC:8788"
/db_xref="MIM:602676"
/translation="MSAKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVE
HEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNST
NTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFYV"
BASE COUNT 321 a 290 c 257 g 282 t
ORIGIN
1 gggagagaga ggccggtcct ggtctggccg ctgcggctgc tagcccgagg tctccaagcc
61 gggctgcggc tccatcctcg gctcctgggc accgtctgcg aggctccgcc gaccagagtg
121 agaaagccgc gggcggcgac cgccgcatca tgtcagccaa ggacgagcgg gccagggaga
181 tcctgagggg cttcaaacta aattggatga accttcggga tgctgagaca gggaagatac
241 tctggcaagg aacagaagac ctgtctgtcc ctggtgtgga gcatgaagcc cgtgttccca
301 agaaaatcct caagtgcaag gcagtgtctc gagaacttaa tttttcttcg acagaacaaa
361 tggaaaaatt ccgcctggaa caaaaagttt acttcaaagg gcaatgccta gaagaatggt
421 tcttcgagtt tggctttgtg atccctaact ccacaaatac ctggcagtcc ttgatagagg
481 cagcacccga gtcccagatg atgccagcaa gcgtcttaac tgggaacgtt atcatagaaa
541 caaagttttt tgacgacgat cttcttgtaa gcacatccag agtgagactt ttctatgttt
601 gaaagaagaa tgtgtgtaca tttcaagaat ttgggttttt tggagggagg aggaaactgt
661 ttactttttt cctccacacg tttgattttt gacacataca cccctaattc cctcaacagc
721 agaacctacc tgcagccacc aggggaccag ctctgtgtag gtaaccagat ggctcttttt
781 cccaagccac catcttccag ctgaccagac taaactccca accccagacc agggcagggg
841 acaggtctca agtccttccc agcatacaca cagggaacaa acacatacca caaaccggta
901 actgtacctg tcaccctcct tgtctcctcc ttgggcccta caggctacac atctaccttt
961 ggcccctggt tttggaaaaa ttccgtgttc ctgacccatg tttagttttt tcctaccatt
1021 tctatttcat acattctcat acatttaact tgtaaaatag actgtgatat tattacataa
1081 tgtaattaaa aatatgaatt aaaatattcc tacagtcttt agcatggcaa aaaaaaaaaa
1141 aaaaaaaaaa
//