LOCUS BC007830 1677 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting and assembly machinery component 50 homolog
(S. cerevisiae), mRNA (cDNA clone MGC:14085 IMAGE:3635175),
complete cds.
ACCESSION BC007830
VERSION BC007830.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1677)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1677)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: a Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222323.
FEATURES Location/Qualifiers
source 1..1677
/db_xref="H-InvDB:HIT000033476"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14085 IMAGE:3635175"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1677
/gene="SAMM50"
/gene_synonym="CGI-51"
/gene_synonym="OMP85"
/gene_synonym="SAM50"
/gene_synonym="TOB55"
/gene_synonym="TRG-3"
/gene_synonym="YNL026W"
/db_xref="GeneID:25813"
/db_xref="HGNC:HGNC:24276"
CDS 105..1511
/gene="SAMM50"
/gene_synonym="CGI-51"
/gene_synonym="OMP85"
/gene_synonym="SAM50"
/gene_synonym="TOB55"
/gene_synonym="TRG-3"
/gene_synonym="YNL026W"
/codon_start=1
/product="sorting and assembly machinery component 50
homolog (S. cerevisiae)"
/protein_id="AAH07830.1"
/db_xref="GeneID:25813"
/db_xref="HGNC:HGNC:24276"
/translation="MGTVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKD
VVVQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVL
IDTCQGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVT
FQFSYGTKETSYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFP
IWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRG
ALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIA
DRFYLGGPTSVRGFSMHSIGPQSEGDYLGGEAYWAGLHLYTPLPFRPGQGGFGELFRT
HFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGVQ
TGDRICDGVQFGAGIRFL"
BASE COUNT 444 a 389 c 441 g 403 t
ORIGIN
1 ccttgacctg cagctccgcc accgcggacc cgccttctgc cctcagcagc agacgctctg
61 tcccgcccgg gcagctctgc gaggcagcgg ctggagaggg aaccatgggg actgtgcacg
121 cccggagttt ggagcctctt ccatcaagtg gacctgattt tggaggatta ggagaagaag
181 ctgaatttgt tgaagttgag cctgaagcta aacaggaaat tcttgaaaac aaagatgtgg
241 ttgttcaaca tgttcatttt gatggacttg gaaggactaa agatgatatc atcatttgtg
301 aaattggaga tgttttcaag gccaaaaacc taattgaggt aatgcggaaa tctcatgaag
361 cccgtgaaaa attgctccgt cttggaattt ttagacaagt ggatgttttg attgacacat
421 gtcaaggtga tgacgcactt ccaaatgggt tagacgttac ctttgaagta actgaattga
481 ggagattaac gggcagttat aacaccatgg ttgggaacaa tgaaggcagt atggtacttg
541 gcctcaagct tcctaatctt cttggtcgtg cagaaaaggt gacctttcag ttttcctatg
601 gaacaaaaga aacttcgtat ggcctgtcct tcttcaaacc acggcccgga aacttcgaaa
661 gaaatttctc tgtaaactta tataaagtta ctggacagtt cccttggagc tcactgcggg
721 agacggacag aggaatgtca gctgagtaca gttttcccat atggaagacc agccacactg
781 tcaagtggga aggcgtatgg cgagaactgg gctgcctctc aaggacggcg tcatttgctg
841 ttcgaaaaga aagcggacat tcactgaaat catctctttc gcatgccatg gtcatcgatt
901 ctcggaattc ttccatctta ccaaggagag gtgctttgct gaaagttaac caggaactgg
961 caggctacac tggcggggat gtgagcttca tcaaagaaga ttttgaactt cagttgaaca
1021 agcaactcat atttgattca gttttttcag cgtctttctg gggcggaatg ttggtaccca
1081 ttggtgataa gccgtcaagc attgctgata ggttttacct cgggggaccc acaagcgtcc
1141 gcggattcag catgcacagc atcgggccac agagcgaagg agactaccta ggtggagaag
1201 cgtactgggc cggcctgcac ctctacaccc cattaccttt ccggccaggc cagggtggct
1261 ttggagaact tttccgaaca cacttctttc tcaacgcagg aaacctctgc aacctcaact
1321 atggggaggg ccccaaagct catattcgta agctggctga gtgcatccgc tggtcgtacg
1381 gggccgggat tgtcctcagg cttggcaaca tcgctcggtt ggaacttaat tactgcgtcc
1441 ccatgggagt acagacaggc gacaggatat gtgatggcgt ccagtttgga gctgggataa
1501 ggttcctgta gccgacaccc ctacaggaga agctctggga ctggggcagc agcaaggcgc
1561 ccatgccaca caccgtctct cgaggaaacg cggttcagcg attctttgac tgcggaccct
1621 gtgggaaacc ccgtcaataa atgttaaaga cacactcaaa aaaaaaaaaa aaaaaaa
//