LOCUS BC007810 1278 bp mRNA linear HUM 19-MAR-2007 DEFINITION Homo sapiens calpain 3, (p94), mRNA (cDNA clone IMAGE:4298617), complete cds. ACCESSION BC007810 VERSION BC007810.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1278) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1278) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 26, 2003 this sequence version replaced BC007810.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 20 Row: k Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27765079 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1278 /db_xref="H-InvDB:HIT000033460" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4298617" /tissue_type="Skin, melanotic melanoma, high MDR." /clone_lib="NIH_MGC_49" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1278 /gene="CAPN3" /gene_synonym="CANP3" /gene_synonym="CANPL3" /gene_synonym="nCL-1" /gene_synonym="p94" /db_xref="GeneID:825" /db_xref="HGNC:HGNC:1480" /db_xref="MIM:114240" CDS 225..695 /gene="CAPN3" /gene_synonym="CANP3" /gene_synonym="CANPL3" /gene_synonym="nCL-1" /gene_synonym="p94" /codon_start=1 /product="calpain 3, (p94)" /protein_id="AAH07810.3" /db_xref="GeneID:825" /db_xref="HGNC:HGNC:1480" /db_xref="MIM:114240" /translation="MEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGS GKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIIT MRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA" BASE COUNT 370 a 327 c 295 g 286 t ORIGIN 1 cacaggcgat tggttttagt ggtaggtgtg tggggatctg ttctggtcat ctggatgctg 61 gtcatcggtg tgcagtattg atcaggacct gcaaacccaa aagcttatgg gagctggcac 121 gtcacaaaaa gaaaaaaacc aagccacagc ctggcagctc tgatcaggaa agtgaggaac 181 agcaacaatt ccggaacatt ttcaagcaga tagcaggaga tgacatggag atctgtgcag 241 atgagctcaa gaaggtcctt aacacagtcg tgaacaaaca caaggacctg aagacacacg 301 ggttcacact ggagtcctgc cgtagcatga ttgcgctcat ggatacagat ggctctggaa 361 agctcaacct gcaggagttc caccacctct ggaacaagat taaggcctgg cagaaaattt 421 tcaaacacta tgacacagac cagtccggca ccatcaacag ctacgagatg cgaaatgcag 481 tcaacgacgc aggattccac ctcaacaacc agctctatga catcattacc atgcggtacg 541 cagacaaaca catgaacatc gactttgaca gtttcatctg ctgcttcgtt aggctggagg 601 gcatgttcag agcttttcat gcatttgaca aggatggaga tggtatcatc aagctcaacg 661 ttctggagtg gctgcagctc accatgtatg cctgaaccag gctggcctca tccaaagcca 721 tgcaggatca ctcaggattt cagtttcacc ctctattttc aaagccattt acctcaaagg 781 acccagcagc tacaccccta caggcttcca ggcacctcat cagtcatgtt cctcctccat 841 tttaccccct acccatcctt gatcggtcat gcctagcctg accctttagt aaagcaatga 901 ggtaggaaga acaaaccctt gtccctttgc catgtggagg aaagtgcctg cctctggtcc 961 gagccgcctc ggttctgaag cgagtgctcc tgcttacctt gctctaggct gtctgcagaa 1021 gcacctgccg gtggcactca gcacctcctt gtgctagagc cctccatcac cttcacgctg 1081 tcccaccatg ggccaggaac caaaccagca ctgggttcta ctgctgtggg gtaaactaac 1141 tcagtggaat agggctggtt actttgggct gtccaactca taagtttggc tgcattttga 1201 aaaaagctga tctaaataaa ggcatgtgta tggctggaaa aaaaaaaaaa aaaaaaaaaa 1261 aaaaaaaaaa aaaaaaaa //