LOCUS BC007790 1934 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear receptor subfamily 1, group H, member 2, mRNA
(cDNA clone MGC:14108 IMAGE:3636961), complete cds.
ACCESSION BC007790
VERSION BC007790.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1934)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1934)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56699414.
FEATURES Location/Qualifiers
source 1..1934
/db_xref="H-InvDB:HIT000033449"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14108 IMAGE:3636961"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1934
/gene="NR1H2"
/gene_synonym="LXR-b"
/gene_synonym="LXRB"
/gene_synonym="NER"
/gene_synonym="NER-I"
/gene_synonym="RIP15"
/db_xref="GeneID:7376"
/db_xref="HGNC:HGNC:7965"
/db_xref="MIM:600380"
CDS 149..1534
/gene="NR1H2"
/gene_synonym="LXR-b"
/gene_synonym="LXRB"
/gene_synonym="NER"
/gene_synonym="NER-I"
/gene_synonym="RIP15"
/codon_start=1
/product="nuclear receptor subfamily 1, group H, member 2"
/protein_id="AAH07790.1"
/db_xref="GeneID:7376"
/db_xref="HGNC:HGNC:7965"
/db_xref="MIM:600380"
/translation="MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDP
DVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVL
SCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVL
SEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGV
QLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAI
ISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFT
YSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRV
EALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLP
PLLSEIWDVHE"
BASE COUNT 401 a 635 c 580 g 318 t
ORIGIN
1 aagcagagca agggaaccca gggcaacagg agtagttcac tccgcgagag gccgtccacg
61 agacccccgc gcgcagccat gagccccgcc ccccgctgtt gcttggagag gggcgggacc
121 tggagagagg ctgctccgtg accccaccat gtcctctcct accacgagtt ccctggatac
181 ccccctgcct ggaaatggcc cccctcagcc tggcgcccct tcttcttcac ccactgtaaa
241 ggaggagggt ccggagccgt ggcccggggg tccggaccct gatgtcccag gcactgatga
301 ggccagctca gcctgcagca cagactgggt catcccagat cccgaagagg aaccagagcg
361 caagcgaaag aagggcccag ccccgaagat gctgggccac gagctttgcc gtgtctgtgg
421 ggacaaggcc tccggcttcc actacaacgt gctcagctgc gaaggctgca agggcttctt
481 ccggcgcagt gtggtccgtg gtggggccag gcgctatgcc tgccggggtg gcggaacctg
541 ccagatggac gctttcatgc ggcgcaagtg ccagcagtgc cggctgcgca agtgcaagga
601 ggcagggatg agggagcagt gcgtcctttc tgaagaacag atccggaaga agaagattcg
661 gaaacagcag cagcaggagt cacagtcaca gtcgcagtca cctgtggggc cgcagggcag
721 cagcagctca gcctctgggc ctggggcttc ccctggtgga tctgaggcag gcagccaggg
781 ctccggggaa ggcgagggtg tccagctaac agcggctcaa gaactaatga tccagcagtt
841 ggtggcggcc caactgcagt gcaacaaacg ctccttctcc gaccagccca aagtcacgcc
901 ctggcccctg ggcgcagacc cccagtcccg agatgcccgc cagcaacgct ttgcccactt
961 cacggagctg gccatcatct cagtccagga gatcgtggac ttcgctaagc aagtgcctgg
1021 tttcctgcag ctgggccggg aggaccagat cgccctcctg aaggcatcca ctatcgagat
1081 catgctgcta gagacagcca ggcgctacaa ccacgagaca gagtgtatca ccttcttgaa
1141 ggacttcacc tacagcaagg acgacttcca ccgtgcaggc ctgcaggtgg agttcatcaa
1201 ccccatcttc gagttctcgc gggccatgcg gcggctgggc ctggacgacg ctgagtacgc
1261 cctgctcatc gccatcaaca tcttctcggc cgaccggccc aacgtgcagg agccgggccg
1321 cgtggaggcg ttgcagcagc cctacgtgga ggcgctgctg tcctacacgc gcatcaagag
1381 gccgcaggac cagctgcgct tcccgcgcat gctcatgaag ctggtgagcc tgcgcacgct
1441 gagctctgtg cactcggagc aggtcttcgc cttgcggctc caggacaaga agctgccgcc
1501 tctgctgtcg gagatctggg acgtccacga gtgaggggct ggccacccag ccccacagcc
1561 ttgcctgacc accctccagc agatagacgc cggcacccct tcctcttcct agggtggaag
1621 gggccctggg ccgagcctgt agacctatcg gctctcatcc cttgggataa gccccagtcc
1681 aggtccagga ggctccctcc ctgcccagcg agtcttccag aaggggtgaa agggttgcag
1741 gtcccgacca ctgacccttc ccggctgccc tccctcccca gcttacacct caagcccagc
1801 acgcagtgca ccttgaacag agggagggga ggacccatgg ctctcccccc tagccgggga
1861 gaccaggggc cttcctcttc ctctgctttt atttaataaa aactaaaaac agaataaaaa
1921 aaaaaaaaaa aaaa
//